Cow genome map
| Conread name: | rhyp26c_h22.y1 |
| Conread position: | 109-245 |
| Cow position: | chr23:7611396-7611257 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 117-425 |
| Cow position: | chr23:32662675-32662354 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 238 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 82, 42 |
| Conread position: | 122-238 |
| Cow position: | chr23:16237137-16237254 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 64, 98 |
| Conread position: | 122-242 |
| Cow position: | chr23:37223954-37224074 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 76, 67 |
| Conread position: | 122-243 |
| Cow position: | chr23:11434141-11434266 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 122-317 |
| Cow position: | chr23:20585582-20585787 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 68, 150 |
| Conread position: | 122-323 |
| Cow position: | chr23:17474521-17474726 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 40, 118 |
| Conread position: | 122-418 |
| Cow position: | chr23:23471028-23470729 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 157 |
| Conread position: | 122-447 |
| Cow position: | chr23:11564260-11564585 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 27 |
| Conread position: | 122-447 |
| Cow position: | chr23:26067212-26066875 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 242 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 59, 178 |
| Conread position: | 123-231 |
| Cow position: | chr23:19792093-19791982 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 123-385 |
| Cow position: | chr23:17000823-17000554 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 65, 27 |
| Conread position: | 123-396 |
| Cow position: | chr23:16793700-16793406 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 65, 260 |
| Conread position: | 123-405 |
| Cow position: | chr23:30773581-30773881 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 36 |
| Conread position: | 123-446 |
| Cow position: | chr23:28721120-28721443 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 66, 40 |
| Conread position: | 124-358 |
| Cow position: | chr23:16072227-16072477 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 53, 197 |
| Conread position: | 125-446 |
| Cow position: | chr23:9711479-9711833 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 257 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 64, 320 |
| Conread position: | 126-441 |
| Cow position: | chr23:22588164-22588509 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 127-267 |
| Cow position: | chr23:23192041-23192182 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 170-438 |
| Cow position: | chr23:40525933-40526204 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 27, 9 |
| Conread position: | 204-421 |
| Cow position: | chr23:19002061-19002286 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 34, 13 |
| Conread position: | 222-448 |
| Cow position: | chr23:36146477-36146701 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 204, 141 |
| Conread position: | 226-447 |
| Cow position: | chr23:40862322-40862094 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 226-448 |
| Cow position: | chr23:20781798-20781578 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 19, 7 |
| Conread position: | 227-339 |
| Cow position: | chr23:496399-496515 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 96 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 19, 6 |
| Conread position: | 227-399 |
| Cow position: | chr23:1663654-1663492 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 227-402 |
| Cow position: | chr23:35177296-35177120 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 15, 69 |
| Conread position: | 227-441 |
| Cow position: | chr23:16237272-16237499 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 178 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 227-448 |
| Cow position: | chr23:3715746-3715519 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 48, 22 |
| Conread position: | 233-342 |
| Cow position: | chr23:2956153-2956040 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 238-441 |
| Cow position: | chr23:31607184-31607399 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 37, 142 |
| Conread position: | 239-448 |
| Cow position: | chr23:37224102-37224312 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 186, 120 |
| Conread position: | 239-450 |
| Cow position: | chr23:29345795-29346007 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 121, 51 |
| Conread position: | 240-380 |
| Cow position: | chr23:21659908-21659761 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 240-417 |
| Cow position: | chr23:28894993-28895181 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 40, 94 |
| Conread position: | 240-421 |
| Cow position: | chr23:25378619-25378438 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 68, 43 |
| Conread position: | 240-438 |
| Cow position: | chr23:13511699-13511497 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 60, 151 |
| Conread position: | 240-441 |
| Cow position: | chr23:15728730-15728927 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 17, 54 |
| Conread position: | 240-447 |
| Cow position: | chr23:344210-344423 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 240-447 |
| Cow position: | chr23:38854772-38854979 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 47, 61 |
| Conread position: | 240-448 |
| Cow position: | chr23:9594866-9595075 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 72, 123 |
| Conread position: | 240-448 |
| Cow position: | chr23:16609843-16610056 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 37, 119 |
| Conread position: | 240-448 |
| Cow position: | chr23:19978986-19979194 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 120, 51 |
| Conread position: | 240-448 |
| Cow position: | chr23:20752978-20752767 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 171 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 37, 106 |
| Conread position: | 240-448 |
| Cow position: | chr23:25531484-25531690 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 15, 22 |
| Conread position: | 240-448 |
| Cow position: | chr23:25864729-25864928 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 194, 40 |
| Conread position: | 242-448 |
| Cow position: | chr23:38248856-38248654 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 184, 47 |
| Conread position: | 245-407 |
| Cow position: | chr23:792072-792235 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 115, 138 |
| Conread position: | 245-423 |
| Cow position: | chr23:19636301-19636483 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 35, 72 |
| Conread position: | 245-424 |
| Cow position: | chr23:16058552-16058379 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 21, 31 |
| Conread position: | 246-436 |
| Cow position: | chr23:7221054-7221245 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 67, 178 |
| Conread position: | 247-447 |
| Cow position: | chr23:14126525-14126330 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 113, 28 |
| Conread position: | 250-424 |
| Cow position: | chr23:30210389-30210564 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 36, 115 |
| Conread position: | 253-439 |
| Cow position: | chr23:14662053-14662231 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 45, 0 |
Show alignments to all cow chromosomes.