Cow genome map
| Conread name: | rhyp26c_h22.y1 |
| Conread position: | 109-239 |
| Cow position: | chr24:18786819-18786948 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 81, 9 |
| Conread position: | 115-441 |
| Cow position: | chr24:28279724-28279379 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 265 |
| Conread position: | 122-230 |
| Cow position: | chr24:36497644-36497754 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 122-231 |
| Cow position: | chr24:40809273-40809385 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 67, 15 |
| Conread position: | 122-243 |
| Cow position: | chr24:19754664-19754541 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 66, 19 |
| Conread position: | 122-243 |
| Cow position: | chr24:34368913-34369042 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 122-252 |
| Cow position: | chr24:11201555-11201688 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 122-267 |
| Cow position: | chr24:6507678-6507827 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 122-424 |
| Cow position: | chr24:17981277-17980968 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 60, 78 |
| Conread position: | 122-435 |
| Cow position: | chr24:39123935-39123609 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 243 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 69, 253 |
| Conread position: | 122-448 |
| Cow position: | chr24:1271797-1272141 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 92 |
| Conread position: | 123-244 |
| Cow position: | chr24:19612098-19611974 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 66, 60 |
| Conread position: | 123-369 |
| Cow position: | chr24:30940384-30940637 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 190 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 65, 101 |
| Conread position: | 124-436 |
| Cow position: | chr24:10546160-10545862 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 65, 126 |
| Conread position: | 124-448 |
| Cow position: | chr24:2730526-2730842 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 31, 20 |
| Conread position: | 124-448 |
| Cow position: | chr24:25678114-25677762 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 295 |
| Conread position: | 125-242 |
| Cow position: | chr24:32158186-32158308 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 126-243 |
| Cow position: | chr24:31378839-31378721 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 62, 52 |
| Conread position: | 135-451 |
| Cow position: | chr24:35529987-35529648 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 250 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 56, 210 |
| Conread position: | 145-369 |
| Cow position: | chr24:22305583-22305354 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 174-448 |
| Cow position: | chr24:33944410-33944135 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 37, 26 |
| Conread position: | 210-446 |
| Cow position: | chr24:31378725-31378484 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 185 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 29, 7 |
| Conread position: | 210-448 |
| Cow position: | chr24:14337697-14337463 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 19, 36 |
| Conread position: | 212-358 |
| Cow position: | chr24:39808100-39807957 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 8, 55 |
| Conread position: | 212-424 |
| Cow position: | chr24:40091606-40091818 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 29, 107 |
| Conread position: | 217-441 |
| Cow position: | chr24:30900265-30900493 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 23, 149 |
| Conread position: | 221-424 |
| Cow position: | chr24:39350257-39350453 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 13, 59 |
| Conread position: | 221-447 |
| Cow position: | chr24:35569145-35568918 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 11, 90 |
| Conread position: | 221-447 |
| Cow position: | chr24:39681814-39681584 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 21, 95 |
| Conread position: | 226-421 |
| Cow position: | chr24:27054361-27054157 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 226-424 |
| Cow position: | chr24:18076100-18075903 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 17, 55 |
| Conread position: | 226-424 |
| Cow position: | chr24:23685117-23685307 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 20, 51 |
| Conread position: | 227-448 |
| Cow position: | chr24:32758806-32759042 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 229-440 |
| Cow position: | chr24:6342132-6341905 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 233-438 |
| Cow position: | chr24:14617601-14617397 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 13, 132 |
| Conread position: | 233-447 |
| Cow position: | chr24:37204931-37205150 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 133 |
| Conread position: | 236-422 |
| Cow position: | chr24:30695762-30695943 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 124, 61 |
| Conread position: | 236-448 |
| Cow position: | chr24:211927-211709 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 236-448 |
| Cow position: | chr24:16476345-16476135 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 38, 90 |
| Conread position: | 236-448 |
| Cow position: | chr24:19465977-19466205 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 10, 193 |
| Conread position: | 238-424 |
| Cow position: | chr24:39259099-39258918 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 8, 66 |
| Conread position: | 238-447 |
| Cow position: | chr24:43733912-43733698 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 171 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 8, 128 |
| Conread position: | 239-450 |
| Cow position: | chr24:32204855-32205068 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 37, 56 |
| Conread position: | 240-371 |
| Cow position: | chr24:29691352-29691493 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 240-424 |
| Cow position: | chr24:6061460-6061645 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 37, 11 |
| Conread position: | 240-424 |
| Cow position: | chr24:20862019-20862203 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 35, 84 |
| Conread position: | 240-441 |
| Cow position: | chr24:18485059-18485265 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 71, 44 |
| Conread position: | 240-443 |
| Cow position: | chr24:2970668-2970874 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 47, 120 |
| Conread position: | 240-447 |
| Cow position: | chr24:27633345-27633142 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 186, 49 |
| Conread position: | 240-447 |
| Cow position: | chr24:28028769-28028976 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 119, 130 |
| Conread position: | 240-448 |
| Cow position: | chr24:38267128-38266921 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 38, 105 |
| Conread position: | 244-399 |
| Cow position: | chr24:18786985-18787141 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 33, 118 |
| Conread position: | 244-421 |
| Cow position: | chr24:29679375-29679554 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 244-438 |
| Cow position: | chr24:14746568-14746375 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 33, 64 |
| Conread position: | 245-350 |
| Cow position: | chr24:31258403-31258513 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 245-351 |
| Cow position: | chr24:19611943-19611834 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 32, 101 |
| Conread position: | 245-422 |
| Cow position: | chr24:27683512-27683686 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 149 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 94, 23 |
| Conread position: | 245-447 |
| Cow position: | chr24:30860570-30860366 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 32, 119 |
| Conread position: | 248-447 |
| Cow position: | chr24:39500348-39500554 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 28, 129 |
| Conread position: | 248-448 |
| Cow position: | chr24:34369077-34369278 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 51, 42 |
| Conread position: | 249-398 |
| Cow position: | chr24:13297788-13297934 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 260-448 |
| Cow position: | chr24:23556415-23556601 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 100, 28 |
| Conread position: | 261-448 |
| Cow position: | chr24:25112120-25111930 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 19, 39 |
| Conread position: | 280-447 |
| Cow position: | chr24:8591235-8591067 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 48, 33 |
| Conread position: | 283-424 |
| Cow position: | chr24:30428033-30427895 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 77, 100 |
Show alignments to all cow chromosomes.