Cow genome map
| Conread name: | rhyp26c_h22.y1 |
| Conread position: | 114-247 |
| Cow position: | chr27:21971051-21970914 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 121-437 |
| Cow position: | chr27:20510054-20510380 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 234 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 70, 236 |
| Conread position: | 122-239 |
| Cow position: | chr27:11416291-11416412 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 122-406 |
| Cow position: | chr27:23662753-23662444 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 69, 213 |
| Conread position: | 122-447 |
| Cow position: | chr27:27867821-27867492 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 23 |
| Conread position: | 123-224 |
| Cow position: | chr27:18219238-18219342 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 92 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 125-351 |
| Cow position: | chr27:9692174-9691944 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 66, 72 |
| Conread position: | 125-442 |
| Cow position: | chr27:26441205-26440860 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 325 |
| Conread position: | 126-242 |
| Cow position: | chr27:14937586-14937463 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 126-357 |
| Cow position: | chr27:11601120-11600889 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 51, 77 |
| Conread position: | 126-406 |
| Cow position: | chr27:9562491-9562202 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 64, 11 |
| Conread position: | 126-439 |
| Cow position: | chr27:6037014-6037315 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 225 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 51, 66 |
| Conread position: | 126-447 |
| Cow position: | chr27:29019890-29019543 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 75 |
| Conread position: | 136-447 |
| Cow position: | chr27:11762850-11762536 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 234 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 22, 116 |
| Conread position: | 170-448 |
| Cow position: | chr27:26935987-26935714 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 57, 16 |
| Conread position: | 217-436 |
| Cow position: | chr27:27233989-27234214 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 15, 145 |
| Conread position: | 224-357 |
| Cow position: | chr27:11416423-11416563 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 224-441 |
| Cow position: | chr27:1183897-1183679 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 56, 16 |
| Conread position: | 226-447 |
| Cow position: | chr27:16580602-16580824 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 51, 14 |
| Conread position: | 229-423 |
| Cow position: | chr27:30560897-30561090 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 57, 133 |
| Conread position: | 236-397 |
| Cow position: | chr27:10086694-10086530 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 10, 51 |
| Conread position: | 236-422 |
| Cow position: | chr27:25676215-25676403 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 10, 126 |
| Conread position: | 236-447 |
| Cow position: | chr27:17397462-17397246 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 9, 192 |
| Conread position: | 237-386 |
| Cow position: | chr27:16493570-16493712 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 93, 36 |
| Conread position: | 237-405 |
| Cow position: | chr27:23600257-23600424 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 9, 25 |
| Conread position: | 237-448 |
| Cow position: | chr27:15200691-15200901 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 6, 41 |
| Conread position: | 238-448 |
| Cow position: | chr27:27053287-27053501 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 239-397 |
| Cow position: | chr27:19601373-19601528 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 29, 51 |
| Conread position: | 239-415 |
| Cow position: | chr27:22268494-22268674 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 239-440 |
| Cow position: | chr27:23659344-23659144 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 38, 122 |
| Conread position: | 239-448 |
| Cow position: | chr27:8430445-8430235 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 36, 65 |
| Conread position: | 239-448 |
| Cow position: | chr27:15319444-15319656 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 38, 68 |
| Conread position: | 239-448 |
| Cow position: | chr27:20765965-20765759 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 187, 120 |
| Conread position: | 240-388 |
| Cow position: | chr27:18948602-18948448 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 240-395 |
| Cow position: | chr27:1142035-1141877 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 240-406 |
| Cow position: | chr27:8048748-8048576 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 35, 47 |
| Conread position: | 240-406 |
| Cow position: | chr27:19637637-19637803 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 34, 45 |
| Conread position: | 240-422 |
| Cow position: | chr27:22418773-22418588 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 66, 44 |
| Conread position: | 240-424 |
| Cow position: | chr27:14937433-14937250 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 33, 123 |
| Conread position: | 240-438 |
| Cow position: | chr27:6454205-6454409 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 46, 74 |
| Conread position: | 240-438 |
| Cow position: | chr27:26492707-26492506 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 50, 83 |
| Conread position: | 240-441 |
| Cow position: | chr27:13005834-13006029 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 34, 64 |
| Conread position: | 240-447 |
| Cow position: | chr27:13860739-13860539 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 120, 36 |
| Conread position: | 240-448 |
| Cow position: | chr27:16871919-16871715 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 47, 122 |
| Conread position: | 240-448 |
| Cow position: | chr27:26299830-26300043 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 37, 153 |
| Conread position: | 240-448 |
| Cow position: | chr27:28518289-28518489 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 69, 40 |
| Conread position: | 241-406 |
| Cow position: | chr27:27270543-27270377 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 76, 50 |
| Conread position: | 241-420 |
| Cow position: | chr27:9169650-9169470 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 54, 38 |
| Conread position: | 242-405 |
| Cow position: | chr27:6523034-6523205 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 45, 111 |
| Conread position: | 242-438 |
| Cow position: | chr27:26653302-26653499 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 73, 32 |
| Conread position: | 242-441 |
| Cow position: | chr27:20120451-20120651 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 71, 105 |
| Conread position: | 245-370 |
| Cow position: | chr27:6038595-6038725 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 245-448 |
| Cow position: | chr27:4664480-4664674 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 179, 39 |
| Conread position: | 247-389 |
| Cow position: | chr27:21041605-21041746 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 113, 22 |
| Conread position: | 247-397 |
| Cow position: | chr27:464958-465113 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 251-447 |
| Cow position: | chr27:6073925-6074119 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 59, 113 |
| Conread position: | 257-439 |
| Cow position: | chr27:25982694-25982514 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 103, 14 |
Show alignments to all cow chromosomes.