Cow genome map
| Conread name: | rhyp26c_h22.y1 |
| Conread position: | 109-381 |
| Cow position: | chr28:11500747-11501033 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 11, 218 |
| Conread position: | 121-240 |
| Cow position: | chr28:9821848-9821969 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 68, 16 |
| Conread position: | 122-244 |
| Cow position: | chr28:1202123-1202249 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 122-407 |
| Cow position: | chr28:34150430-34150730 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 227 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 108, 69 |
| Conread position: | 122-423 |
| Cow position: | chr28:28590829-28590523 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 219 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 67, 120 |
| Conread position: | 122-424 |
| Cow position: | chr28:4274722-4275047 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 66, 264 |
| Conread position: | 122-448 |
| Cow position: | chr28:19133896-19133541 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 254 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 122-448 |
| Cow position: | chr28:23230962-23231308 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 259 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 78, 28 |
| Conread position: | 123-421 |
| Cow position: | chr28:31971666-31971964 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 224 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 67, 93 |
| Conread position: | 125-380 |
| Cow position: | chr28:17235654-17235901 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 79, 15 |
| Conread position: | 125-441 |
| Cow position: | chr28:17625054-17625369 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 232 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 64, 102 |
| Conread position: | 139-441 |
| Cow position: | chr28:28414744-28414435 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 15 |
| Conread position: | 208-438 |
| Cow position: | chr28:25564082-25563844 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 183 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 10, 33 |
| Conread position: | 217-386 |
| Cow position: | chr28:19024136-19023954 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 217-441 |
| Cow position: | chr28:29393002-29392767 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 29, 13 |
| Conread position: | 220-421 |
| Cow position: | chr28:7228397-7228599 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 92, 165 |
| Conread position: | 224-436 |
| Cow position: | chr28:13693735-13693519 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 53, 169 |
| Conread position: | 226-447 |
| Cow position: | chr28:17153752-17153541 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 13, 65 |
| Conread position: | 227-422 |
| Cow position: | chr28:21940179-21939981 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 12, 56 |
| Conread position: | 227-439 |
| Cow position: | chr28:14493523-14493312 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 19, 139 |
| Conread position: | 234-421 |
| Cow position: | chr28:11687056-11687246 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 53, 12 |
| Conread position: | 234-421 |
| Cow position: | chr28:16204354-16204546 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 236-453 |
| Cow position: | chr28:26719322-26719113 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 51, 108 |
| Conread position: | 237-401 |
| Cow position: | chr28:34208678-34208509 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 9, 106 |
| Conread position: | 237-422 |
| Cow position: | chr28:6486565-6486379 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 238-448 |
| Cow position: | chr28:11380072-11380285 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 5, 62 |
| Conread position: | 239-370 |
| Cow position: | chr28:15577291-15577425 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 36, 130 |
| Conread position: | 240-424 |
| Cow position: | chr28:23621512-23621331 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 35, 64 |
| Conread position: | 240-441 |
| Cow position: | chr28:18462644-18462848 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 34, 64 |
| Conread position: | 240-448 |
| Cow position: | chr28:9176787-9176996 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 35, 73 |
| Conread position: | 244-446 |
| Cow position: | chr28:12942342-12942145 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 21, 122 |
| Conread position: | 245-422 |
| Cow position: | chr28:29073790-29073969 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 31, 71 |
| Conread position: | 245-436 |
| Cow position: | chr28:10642055-10642246 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 159 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 32, 72 |
| Conread position: | 245-441 |
| Cow position: | chr28:9285411-9285613 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 30, 50 |
| Conread position: | 245-447 |
| Cow position: | chr28:29455694-29455898 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 165 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 32, 49 |
| Conread position: | 245-448 |
| Cow position: | chr28:20963569-20963774 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 111, 102 |
| Conread position: | 246-447 |
| Cow position: | chr28:3769707-3769896 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 187, 54 |
| Conread position: | 248-441 |
| Cow position: | chr28:25825909-25826106 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 27, 127 |
| Conread position: | 249-439 |
| Cow position: | chr28:21873729-21873542 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 26, 65 |
| Conread position: | 249-446 |
| Cow position: | chr28:2340492-2340291 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 28, 7 |
| Conread position: | 251-447 |
| Cow position: | chr28:31871789-31871988 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 29, 84 |
| Conread position: | 255-406 |
| Cow position: | chr28:10035352-10035202 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 22, 96 |
| Conread position: | 257-424 |
| Cow position: | chr28:11007128-11006960 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 7, 33 |
| Conread position: | 287-436 |
| Cow position: | chr28:10514174-10514320 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 73, 0 |
Show alignments to all cow chromosomes.