Cow genome map
| Conread name: | rhyp26c_h22.y1 |
| Conread position: | 120-352 |
| Cow position: | chr29:26129611-26129374 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 69, 218 |
| Conread position: | 121-441 |
| Cow position: | chr29:5964336-5964652 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 16 |
| Conread position: | 122-231 |
| Cow position: | chr29:11766831-11766720 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 95 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 66, 48 |
| Conread position: | 122-231 |
| Cow position: | chr29:16055017-16055129 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 94 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 122-231 |
| Cow position: | chr29:18073054-18072942 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 90 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 122-238 |
| Cow position: | chr29:14758748-14758867 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 122-239 |
| Cow position: | chr29:29302543-29302668 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 122-244 |
| Cow position: | chr29:7054527-7054404 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 66, 30 |
| Conread position: | 123-244 |
| Cow position: | chr29:12451487-12451364 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 57, 14 |
| Conread position: | 123-448 |
| Cow position: | chr29:21925306-21924961 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 252 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 68, 29 |
| Conread position: | 128-448 |
| Cow position: | chr29:7407795-7408138 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 144-406 |
| Cow position: | chr29:7665973-7666236 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 13, 52 |
| Conread position: | 162-448 |
| Cow position: | chr29:11071655-11071953 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 207 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 63, 20 |
| Conread position: | 196-436 |
| Cow position: | chr29:21534667-21534913 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 34, 136 |
| Conread position: | 207-406 |
| Cow position: | chr29:17965955-17965760 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 39, 84 |
| Conread position: | 221-448 |
| Cow position: | chr29:12901124-12901357 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 20, 209 |
| Conread position: | 224-424 |
| Cow position: | chr29:36404798-36404598 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 53, 8 |
| Conread position: | 224-447 |
| Cow position: | chr29:26129479-26129251 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 176 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 15, 174 |
| Conread position: | 236-406 |
| Cow position: | chr29:42268660-42268486 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 236-421 |
| Cow position: | chr29:87049-87241 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 10, 186 |
| Conread position: | 236-444 |
| Cow position: | chr29:6472280-6472072 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 124, 139 |
| Conread position: | 237-446 |
| Cow position: | chr29:12451339-12451125 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 40, 9 |
| Conread position: | 238-436 |
| Cow position: | chr29:19508916-19508723 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 8, 74 |
| Conread position: | 238-438 |
| Cow position: | chr29:39023387-39023577 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 8, 43 |
| Conread position: | 239-438 |
| Cow position: | chr29:603359-603547 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 239-445 |
| Cow position: | chr29:23743092-23743283 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 41, 57 |
| Conread position: | 239-448 |
| Cow position: | chr29:44135498-44135710 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 36, 78 |
| Conread position: | 240-397 |
| Cow position: | chr29:17668450-17668299 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 120, 30 |
| Conread position: | 240-406 |
| Cow position: | chr29:10188015-10187854 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 40, 79 |
| Conread position: | 240-406 |
| Cow position: | chr29:22778216-22778387 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 240-416 |
| Cow position: | chr29:26654079-26654256 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 76, 51 |
| Conread position: | 240-436 |
| Cow position: | chr29:24624207-24624012 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 114, 39 |
| Conread position: | 240-441 |
| Cow position: | chr29:29302699-29302896 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 120, 24 |
| Conread position: | 240-441 |
| Cow position: | chr29:32963517-32963312 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 67, 44 |
| Conread position: | 240-444 |
| Cow position: | chr29:11915781-11915571 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 240-448 |
| Cow position: | chr29:356280-356077 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 183, 36 |
| Conread position: | 240-449 |
| Cow position: | chr29:16359576-16359363 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 35, 152 |
| Conread position: | 242-442 |
| Cow position: | chr29:19907314-19907113 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 46, 118 |
| Conread position: | 245-436 |
| Cow position: | chr29:11787752-11787558 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 42, 156 |
| Conread position: | 245-446 |
| Cow position: | chr29:34736512-34736712 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 30, 117 |
| Conread position: | 245-447 |
| Cow position: | chr29:13554091-13553884 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 165 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 32, 114 |
| Conread position: | 245-447 |
| Cow position: | chr29:34609765-34609972 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 166 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 248-448 |
| Cow position: | chr29:650232-650025 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 29, 0 |
Show alignments to all cow chromosomes.