Cow genome map

Conread name: rhyp26c_h22.y1

Conread position: 119-422
Cow position: chr6:28278835-28278505 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 227
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 69, 18

Conread position: 122-231
Cow position: chr6:32798716-32798828 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 90
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 66, 0

Conread position: 122-231
Cow position: chr6:54144459-54144347 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 97
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 67, 0

Conread position: 122-239
Cow position: chr6:16733571-16733452 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 100
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 67, 56

Conread position: 122-241
Cow position: chr6:50317888-50318010 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 66, 0

Conread position: 122-242
Cow position: chr6:19427607-19427486 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 67, 107

Conread position: 122-246
Cow position: chr6:6367515-6367643 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 66, 94

Conread position: 122-272
Cow position: chr6:9026676-9026523 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 67, 144

Conread position: 122-368
Cow position: chr6:40104842-40104605 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 179
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 156, 69

Conread position: 122-422
Cow position: chr6:35703052-35703366 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 227
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 58, 28

Conread position: 122-424
Cow position: chr6:8986250-8986565 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 183

Conread position: 122-436
Cow position: chr6:10237490-10237178 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 241

Conread position: 122-438
Cow position: chr6:29412632-29412959 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 234
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 66, 249

Conread position: 122-441
Cow position: chr6:2324067-2324393 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 212
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 67, 166

Conread position: 122-447
Cow position: chr6:52556342-52556681 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 243
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 15, 29

Conread position: 122-448
Cow position: chr6:52002511-52002161 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 246
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 67, 15

Conread position: 123-231
Cow position: chr6:827552-827663 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 94
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 66, 0

Conread position: 123-239
Cow position: chr6:47192370-47192492 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 65, 21

Conread position: 123-323
Cow position: chr6:41265266-41265065 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 146
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 114, 42

Conread position: 123-357
Cow position: chr6:32817135-32816880 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 189
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 66, 180

Conread position: 123-358
Cow position: chr6:37054140-37053881 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 193
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 69, 0

Conread position: 124-239
Cow position: chr6:15997063-15997181 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 66, 0

Conread position: 124-375
Cow position: chr6:32412485-32412745 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 178
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 53, 181

Conread position: 124-424
Cow position: chr6:48806854-48807177 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 230
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 50, 261

Conread position: 124-438
Cow position: chr6:11790130-11789801 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 242
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 28, 214

Conread position: 124-447
Cow position: chr6:1907674-1907332 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 240
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 66, 0

Conread position: 125-447
Cow position: chr6:38894960-38895282 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 12

Conread position: 126-228
Cow position: chr6:30160471-30160366 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 93
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 59, 0

Conread position: 126-242
Cow position: chr6:24558031-24557914 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 97
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 64, 0

Conread position: 126-438
Cow position: chr6:16219913-16220223 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 56

Conread position: 127-421
Cow position: chr6:10254377-10254061 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 216
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 48, 242

Conread position: 127-449
Cow position: chr6:62345732-62346059 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 228
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 61, 75

Conread position: 129-423
Cow position: chr6:40736855-40737147 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 203
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 27, 63

Conread position: 134-422
Cow position: chr6:67437109-67436808 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 68

Conread position: 144-244
Cow position: chr6:47326938-47327042 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 87
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 45, 0

Conread position: 163-440
Cow position: chr6:65871967-65871699 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 195
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 26, 36

Conread position: 172-417
Cow position: chr6:33985047-33984791 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 176
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 17, 34

Conread position: 201-446
Cow position: chr6:47624919-47625165 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 190
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 41, 57

Conread position: 209-439
Cow position: chr6:2582908-2582675 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 179
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 13, 106

Conread position: 217-448
Cow position: chr6:48344357-48344120 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 168
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 27, 16

Conread position: 221-439
Cow position: chr6:60153060-60152839 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 166
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 18, 142

Conread position: 221-448
Cow position: chr6:54807249-54807015 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 176
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 56, 32

Conread position: 226-357
Cow position: chr6:17669311-17669177 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 106
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 20, 0

Conread position: 226-385
Cow position: chr6:55892788-55892619 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 14, 0

Conread position: 226-401
Cow position: chr6:47204493-47204314 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 142
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 21, 7

Conread position: 226-404
Cow position: chr6:52247206-52247029 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 130
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 17, 59

Conread position: 226-424
Cow position: chr6:7824779-7824579 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 156
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 49, 79

Conread position: 226-448
Cow position: chr6:13592722-13592502 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 157
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 134, 64

Conread position: 226-448
Cow position: chr6:56376334-56376555 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 167
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 13, 6

Conread position: 228-438
Cow position: chr6:827688-827904 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 163
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 11, 70

Conread position: 228-448
Cow position: chr6:48572868-48573090 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 162
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 18, 95

Conread position: 229-441
Cow position: chr6:47327052-47327269 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 168
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 48, 138

Conread position: 233-406
Cow position: chr6:30474331-30474159 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 134
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 10, 22

Conread position: 233-423
Cow position: chr6:1890834-1891027 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 159
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 9, 85

Conread position: 236-342
Cow position: chr6:61218021-61218133 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 94
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 33, 0

Conread position: 236-401
Cow position: chr6:47026483-47026322 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 120
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 59, 10

Conread position: 236-406
Cow position: chr6:1889084-1889249 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 126
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 120, 44

Conread position: 236-439
Cow position: chr6:416105-415896 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 154
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 71, 48

Conread position: 236-447
Cow position: chr6:12387318-12387530 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 170
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 7, 125

Conread position: 236-447
Cow position: chr6:20379459-20379672 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 167
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 6, 85

Conread position: 236-447
Cow position: chr6:60930892-60931107 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 159
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 51, 60

Conread position: 236-448
Cow position: chr6:68112494-68112694 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 151
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 188, 15

Conread position: 236-462
Cow position: chr6:6367662-6367880 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 166
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 9, 95

Conread position: 238-339
Cow position: chr6:56860554-56860449 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 90
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 39, 0

Conread position: 238-424
Cow position: chr6:3118191-3118379 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 136
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 48, 105

Conread position: 238-444
Cow position: chr6:36652424-36652218 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 149
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 5, 121

Conread position: 239-405
Cow position: chr6:37739192-37739023 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 144
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 36, 127

Conread position: 239-447
Cow position: chr6:41265123-41264919 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 152
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 121, 67

Conread position: 239-447
Cow position: chr6:63197162-63197378 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 157
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 54, 102

Conread position: 239-448
Cow position: chr6:5958023-5958224 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 151
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 121, 37

Conread position: 240-397
Cow position: chr6:36194596-36194432 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 127
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 30, 0

Conread position: 240-398
Cow position: chr6:6994952-6995102 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 127
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 35, 70

Conread position: 240-421
Cow position: chr6:24223155-24223340 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 140
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 35, 126

Conread position: 240-421
Cow position: chr6:53932845-53933027 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 131
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 40, 110

Conread position: 240-423
Cow position: chr6:16634215-16634401 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 147
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 47, 134

Conread position: 240-436
Cow position: chr6:19427456-19427256 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 161
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 37, 187

Conread position: 240-439
Cow position: chr6:55842154-55842357 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 157
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 37, 107

Conread position: 240-446
Cow position: chr6:6731268-6731058 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 158
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 24, 140

Conread position: 240-446
Cow position: chr6:24649854-24649642 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 162
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 34, 16

Conread position: 240-447
Cow position: chr6:35415516-35415728 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 161
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 35, 127

Conread position: 240-447
Cow position: chr6:44371944-44372150 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 161
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 40, 107

Conread position: 240-447
Cow position: chr6:58316049-58315842 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 151
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 35, 124

Conread position: 240-448
Cow position: chr6:8318161-8318374 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 167
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 38, 122

Conread position: 240-448
Cow position: chr6:38614818-38614616 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 148
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 66, 35

Conread position: 242-448
Cow position: chr6:3374567-3374777 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 152
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 39, 171

Conread position: 242-448
Cow position: chr6:15242832-15242626 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 149
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 114, 38

Conread position: 245-343
Cow position: chr6:59588409-59588514 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 90
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 32, 0

Conread position: 245-355
Cow position: chr6:10237043-10237158 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 32, 0

Conread position: 245-388
Cow position: chr6:65852549-65852689 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 117
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 35, 51

Conread position: 246-342
Cow position: chr6:61322605-61322505 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 87
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 31, 0

Conread position: 246-380
Cow position: chr6:30160314-30160181 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 114
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 114, 27

Conread position: 247-448
Cow position: chr6:33851802-33851991 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 154
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 30, 78

Conread position: 249-424
Cow position: chr6:20548990-20548817 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 135
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 38, 71

Conread position: 250-441
Cow position: chr6:28811003-28811195 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 134
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 110, 139

Conread position: 253-435
Cow position: chr6:64436332-64436522 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 145
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 23, 138

Conread position: 255-447
Cow position: chr6:9026505-9026310 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 157
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 22, 103

Conread position: 256-439
Cow position: chr6:55366334-55366520 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 141
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 104, 0

Conread position: 258-436
Cow position: chr6:64427173-64426997 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 127
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 59, 104

Conread position: 274-422
Cow position: chr6:10705804-10705950 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 117
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 15, 87

Show alignments to all cow chromosomes.