Cow genome map

Conread name: rhyp26c_h22.y1

Conread position: 108-320
Cow position: chrX:43980894-43980673 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 157
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 13, 171

Conread position: 117-228
Cow position: chrX:4446854-4446740 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 96
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 72, 0

Conread position: 122-230
Cow position: chrX:159616-159727 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 68, 0

Conread position: 122-242
Cow position: chrX:16419290-16419167 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 66, 0

Conread position: 122-242
Cow position: chrX:27287593-27287716 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 67, 0

Conread position: 122-243
Cow position: chrX:23179135-23179264 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 104
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 13, 0

Conread position: 122-245
Cow position: chrX:25338331-25338201 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 104
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 66, 0

Conread position: 122-349
Cow position: chrX:33802864-33803105 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 175
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 68, 230

Conread position: 122-357
Cow position: chrX:6367633-6367878 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 174
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 45, 125

Conread position: 122-364
Cow position: chrX:31273346-31273106 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 185
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 101, 67

Conread position: 122-371
Cow position: chrX:38999992-38999735 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 177
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 69, 81

Conread position: 122-380
Cow position: chrX:6480121-6479846 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 211
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 69, 239

Conread position: 122-380
Cow position: chrX:31602801-31602541 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 187
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 68, 148

Conread position: 122-404
Cow position: chrX:25967146-25966865 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 215
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 57, 22

Conread position: 122-424
Cow position: chrX:18216412-18216081 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 241
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 15, 57

Conread position: 122-443
Cow position: chrX:26940374-26940708 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 241
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 46, 141

Conread position: 122-448
Cow position: chrX:17042826-17042469 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 267

Conread position: 123-242
Cow position: chrX:630167-630293 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 103
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 65, 0

Conread position: 123-242
Cow position: chrX:6563662-6563540 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 57, 0

Conread position: 123-375
Cow position: chrX:7425608-7425354 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 173
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 64, 190

Conread position: 123-405
Cow position: chrX:33590857-33590551 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 225
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 65, 84

Conread position: 126-231
Cow position: chrX:21640565-21640457 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 94
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 62, 0

Conread position: 126-272
Cow position: chrX:32743673-32743523 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 63, 0

Conread position: 126-291
Cow position: chrX:30088482-30088648 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 126
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 65, 116

Conread position: 126-404
Cow position: chrX:30005374-30005093 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 209
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 65, 37

Conread position: 127-239
Cow position: chrX:9839363-9839248 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 95
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 53, 0

Conread position: 130-242
Cow position: chrX:34355839-34355949 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 92
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 60, 0

Conread position: 139-448
Cow position: chrX:9161702-9161367 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 244
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 50, 205

Conread position: 161-450
Cow position: chrX:30163066-30162774 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 209
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 28, 38

Conread position: 183-439
Cow position: chrX:13322952-13323206 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 178
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 34, 26

Conread position: 204-359
Cow position: chrX:21566432-21566269 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 26, 13

Conread position: 210-438
Cow position: chrX:7361847-7362060 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 167
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 15, 0

Conread position: 213-438
Cow position: chrX:2186268-2186047 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 159
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 147, 62

Conread position: 217-398
Cow position: chrX:32821042-32820859 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 135
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 30, 19

Conread position: 217-419
Cow position: chrX:11633695-11633488 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 146
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 18, 151

Conread position: 217-421
Cow position: chrX:13382344-13382133 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 147
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 24, 18

Conread position: 217-438
Cow position: chrX:157759-157984 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 161
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 21, 133

Conread position: 217-441
Cow position: chrX:28787367-28787152 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 172
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 22, 9

Conread position: 224-380
Cow position: chrX:8913925-8913768 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 125
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 6, 17

Conread position: 224-380
Cow position: chrX:8915669-8915512 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 125
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 6, 17

Conread position: 226-358
Cow position: chrX:41070941-41070805 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 20, 28

Conread position: 226-362
Cow position: chrX:18417588-18417726 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 111
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 60, 14

Conread position: 226-424
Cow position: chrX:31340713-31340509 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 153
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 13, 0

Conread position: 226-439
Cow position: chrX:25419153-25419371 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 173
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 20, 202

Conread position: 226-447
Cow position: chrX:17630804-17631022 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 158
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 61, 14

Conread position: 226-448
Cow position: chrX:24201190-24200971 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 161
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 49, 138

Conread position: 227-445
Cow position: chrX:8681923-8682148 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 172
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 12, 168

Conread position: 229-435
Cow position: chrX:21664723-21664932 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 162
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 48, 19

Conread position: 230-439
Cow position: chrX:1978511-1978300 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 165
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 16, 84

Conread position: 232-447
Cow position: chrX:160033-160253 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 170
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 7, 133

Conread position: 233-404
Cow position: chrX:24259585-24259757 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 130
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 6, 73

Conread position: 235-398
Cow position: chrX:20922155-20921995 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 7, 50

Conread position: 235-448
Cow position: chrX:25713788-25713579 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 149
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 125, 173

Conread position: 236-447
Cow position: chrX:8517863-8517656 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 161
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 6, 49

Conread position: 236-447
Cow position: chrX:11562151-11561934 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 172
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 10, 56

Conread position: 236-447
Cow position: chrX:38840883-38840668 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 173
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 9, 82

Conread position: 236-448
Cow position: chrX:17725968-17725757 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 154
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 7, 124

Conread position: 236-450
Cow position: chrX:11675057-11674841 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 156
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 10, 50

Conread position: 236-451
Cow position: chrX:27514862-27514644 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 152
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 35, 43

Conread position: 237-447
Cow position: chrX:23414379-23414588 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 154
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 123, 69

Conread position: 237-448
Cow position: chrX:16283950-16284168 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 172
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 43, 128

Conread position: 238-397
Cow position: chrX:23667116-23666954 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 12, 126

Conread position: 238-423
Cow position: chrX:33827025-33827216 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 148
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 8, 0

Conread position: 238-441
Cow position: chrX:24132158-24132365 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 151
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 8, 93

Conread position: 238-441
Cow position: chrX:39701215-39701013 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 148
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 8, 63

Conread position: 238-446
Cow position: chrX:20791826-20792037 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 158
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 8, 126

Conread position: 238-448
Cow position: chrX:15329637-15329432 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 146
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 196, 42

Conread position: 239-421
Cow position: chrX:42492527-42492707 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 131
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 70, 52

Conread position: 239-447
Cow position: chrX:25848902-25848699 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 147
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 121, 41

Conread position: 239-448
Cow position: chrX:17541948-17541743 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 148
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 121, 37

Conread position: 240-377
Cow position: chrX:39415379-39415518 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 240-398
Cow position: chrX:25388246-25388407 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 120
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 21, 0

Conread position: 240-406
Cow position: chrX:16514275-16514442 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 138
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 47, 132

Conread position: 240-424
Cow position: chrX:10302326-10302143 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 145
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 40, 76

Conread position: 240-436
Cow position: chrX:10373304-10373103 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 145
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 120, 61

Conread position: 240-438
Cow position: chrX:18456390-18456181 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 167
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 43, 0

Conread position: 240-438
Cow position: chrX:40567591-40567388 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 139
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 35, 0

Conread position: 240-441
Cow position: chrX:41560265-41560453 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 148
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 185, 40

Conread position: 240-447
Cow position: chrX:10411997-10412206 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 149
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 55, 185

Conread position: 240-447
Cow position: chrX:25232580-25232370 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 161
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 37, 117

Conread position: 240-447
Cow position: chrX:29032399-29032197 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 157
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 35, 104

Conread position: 240-447
Cow position: chrX:42994602-42994394 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 152
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 68, 40

Conread position: 240-448
Cow position: chrX:41743901-41743692 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 153
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 35, 59

Conread position: 240-448
Cow position: chrX:42247197-42247405 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 154
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 46, 76

Conread position: 240-451
Cow position: chrX:1514421-1514625 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 151
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 76, 50

Conread position: 240-451
Cow position: chrX:1616055-1616272 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 159
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 36, 55

Conread position: 241-447
Cow position: chrX:26625688-26625897 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 149
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 99, 33

Conread position: 241-448
Cow position: chrX:37956348-37956145 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 150
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 36, 58

Conread position: 242-389
Cow position: chrX:2147332-2147174 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 34, 0

Conread position: 242-439
Cow position: chrX:28929824-28929632 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 136
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 118, 0

Conread position: 245-378
Cow position: chrX:24747415-24747545 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 110
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 30, 40

Conread position: 245-404
Cow position: chrX:46029000-46029157 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 132
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 35, 8

Conread position: 245-424
Cow position: chrX:630324-630503 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 149
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 39, 61

Conread position: 245-424
Cow position: chrX:6563505-6563317 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 151
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 32, 170

Conread position: 245-439
Cow position: chrX:2648369-2648560 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 149
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 42, 111

Conread position: 245-441
Cow position: chrX:32743519-32743324 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 160
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 32, 102

Conread position: 245-447
Cow position: chrX:36840854-36840653 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 158
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 115, 28

Conread position: 246-407
Cow position: chrX:38188095-38188260 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 124
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 29, 71

Conread position: 247-447
Cow position: chrX:17744047-17743840 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 160
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 29, 14

Conread position: 247-447
Cow position: chrX:25338167-25337959 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 168
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 22, 0

Conread position: 248-380
Cow position: chrX:25193641-25193509 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 112
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 29, 115

Conread position: 248-430
Cow position: chrX:47178136-47177953 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 131
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 41, 160

Conread position: 248-438
Cow position: chrX:17271305-17271500 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 161
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 248-439
Cow position: chrX:28856955-28856767 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 138
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 71, 113

Conread position: 249-424
Cow position: chrX:3154267-3154442 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 132
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.