Cow genome map
| Conread name: | rjca18c_c23.y1 |
| Conread position: | 334-495 |
| Cow position: | chr1:19439481-19439323 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 65, 119 |
| Conread position: | 334-582 |
| Cow position: | chr1:85548-85794 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 95 |
| Conread position: | 334-582 |
| Cow position: | chr1:31233019-31232793 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 335-527 |
| Cow position: | chr1:3020464-3020267 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 65, 172 |
| Conread position: | 335-574 |
| Cow position: | chr1:28512329-28512104 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 335-577 |
| Cow position: | chr1:85409551-85409312 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 181 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 64, 92 |
| Conread position: | 335-583 |
| Cow position: | chr1:40420139-40419899 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 64, 46 |
| Conread position: | 335-583 |
| Cow position: | chr1:49728195-49728443 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 64, 117 |
| Conread position: | 335-583 |
| Cow position: | chr1:64479652-64479404 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 55, 44 |
| Conread position: | 335-584 |
| Cow position: | chr1:6985521-6985288 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 64, 110 |
| Conread position: | 335-584 |
| Cow position: | chr1:11831637-11831871 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 64, 14 |
| Conread position: | 335-584 |
| Cow position: | chr1:14560218-14559992 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 335-584 |
| Cow position: | chr1:18223550-18223315 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 335-584 |
| Cow position: | chr1:34892884-34893136 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 64, 73 |
| Conread position: | 335-584 |
| Cow position: | chr1:65155461-65155214 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 126 |
| Conread position: | 335-584 |
| Cow position: | chr1:71555492-71555238 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 340-500 |
| Cow position: | chr1:82387251-82387411 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 59, 89 |
| Conread position: | 340-503 |
| Cow position: | chr1:23624924-23625075 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 340-505 |
| Cow position: | chr1:90370625-90370463 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 61, 28 |
| Conread position: | 340-556 |
| Cow position: | chr1:74713782-74713988 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 59, 74 |
| Conread position: | 340-578 |
| Cow position: | chr1:37739469-37739239 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 22, 113 |
| Conread position: | 340-579 |
| Cow position: | chr1:77755400-77755155 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 340-583 |
| Cow position: | chr1:47371280-47371500 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 59, 76 |
| Conread position: | 340-584 |
| Cow position: | chr1:3750219-3750455 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 59, 94 |
| Conread position: | 340-584 |
| Cow position: | chr1:9511954-9511729 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 340-584 |
| Cow position: | chr1:41092849-41092608 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 59, 69 |
| Conread position: | 340-584 |
| Cow position: | chr1:45978977-45979203 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 52, 69 |
| Conread position: | 340-584 |
| Cow position: | chr1:61242040-61242280 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 59, 43 |
| Conread position: | 340-584 |
| Cow position: | chr1:88017508-88017270 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 184 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 59, 30 |
| Conread position: | 341-496 |
| Cow position: | chr1:30518443-30518596 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 341-582 |
| Cow position: | chr1:101883936-101884169 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 58, 25 |
| Conread position: | 341-583 |
| Cow position: | chr1:8726394-8726147 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 55, 80 |
| Conread position: | 341-584 |
| Cow position: | chr1:37432701-37432943 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 58, 171 |
| Conread position: | 341-584 |
| Cow position: | chr1:52207314-52207549 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 58, 88 |
| Conread position: | 342-580 |
| Cow position: | chr1:25885775-25885545 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 57, 66 |
| Conread position: | 342-583 |
| Cow position: | chr1:81371143-81370914 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 57, 28 |
| Conread position: | 342-584 |
| Cow position: | chr1:39244236-39243990 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 72, 97 |
| Conread position: | 343-584 |
| Cow position: | chr1:57757518-57757744 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 343-584 |
| Cow position: | chr1:82572918-82572681 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 65 |
| Conread position: | 347-504 |
| Cow position: | chr1:87914626-87914474 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 53, 38 |
| Conread position: | 347-584 |
| Cow position: | chr1:64098955-64098719 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 179 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 81, 54 |
| Conread position: | 348-569 |
| Cow position: | chr1:62041712-62041921 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 51, 58 |
| Conread position: | 353-583 |
| Cow position: | chr1:22071982-22072204 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 46, 115 |
| Conread position: | 354-583 |
| Cow position: | chr1:64745415-64745192 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 13, 74 |
| Conread position: | 356-584 |
| Cow position: | chr1:101967019-101966796 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 43, 52 |
| Conread position: | 360-539 |
| Cow position: | chr1:92550776-92550598 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 39, 56 |
| Conread position: | 364-583 |
| Cow position: | chr1:23510442-23510234 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 36, 44 |
| Conread position: | 364-584 |
| Cow position: | chr1:54365272-54365054 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 366-556 |
| Cow position: | chr1:100132219-100132414 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 376-584 |
| Cow position: | chr1:63134282-63134475 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 23, 32 |
| Conread position: | 378-584 |
| Cow position: | chr1:6866053-6865849 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 21, 84 |
| Conread position: | 395-584 |
| Cow position: | chr1:31951736-31951919 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 78, 5 |
| Conread position: | 398-577 |
| Cow position: | chr1:11878806-11878630 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 401-584 |
| Cow position: | chr1:20135676-20135854 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 18, 28 |
| Conread position: | 409-582 |
| Cow position: | chr1:68332809-68332638 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 410-569 |
| Cow position: | chr1:80329564-80329404 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 410-584 |
| Cow position: | chr1:59910969-59911143 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 415-583 |
| Cow position: | chr1:3746498-3746661 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 435-557 |
| Cow position: | chr1:78752593-78752472 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 439-567 |
| Cow position: | chr1:71086148-71086273 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
Show alignments to all cow chromosomes.