Cow genome map
| Conread name: | rjca18c_c23.y1 |
| Conread position: | 303-544 |
| Cow position: | chr11:60511809-60511566 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 96, 217 |
| Conread position: | 334-493 |
| Cow position: | chr11:12065011-12065168 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 65, 80 |
| Conread position: | 334-583 |
| Cow position: | chr11:69491718-69491960 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 8, 61 |
| Conread position: | 335-514 |
| Cow position: | chr11:25856496-25856668 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 64, 25 |
| Conread position: | 335-543 |
| Cow position: | chr11:43831504-43831294 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 65, 75 |
| Conread position: | 335-544 |
| Cow position: | chr11:80269544-80269345 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 64, 118 |
| Conread position: | 335-572 |
| Cow position: | chr11:18153944-18153712 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 64, 123 |
| Conread position: | 335-576 |
| Cow position: | chr11:8087854-8087623 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 187 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 64, 28 |
| Conread position: | 335-577 |
| Cow position: | chr11:35251684-35251449 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 64, 94 |
| Conread position: | 335-582 |
| Cow position: | chr11:1774587-1774340 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 96 |
| Conread position: | 335-582 |
| Cow position: | chr11:34303770-34304011 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 184 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 64, 119 |
| Conread position: | 335-582 |
| Cow position: | chr11:40574465-40574226 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 64, 37 |
| Conread position: | 335-584 |
| Cow position: | chr11:18452840-18452606 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 64, 81 |
| Conread position: | 335-584 |
| Cow position: | chr11:34397785-34398027 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 187 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 64, 31 |
| Conread position: | 335-584 |
| Cow position: | chr11:34761422-34761182 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 173, 44 |
| Conread position: | 335-584 |
| Cow position: | chr11:55119773-55120015 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 64, 18 |
| Conread position: | 335-584 |
| Cow position: | chr11:58793702-58793459 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 65, 48 |
| Conread position: | 338-583 |
| Cow position: | chr11:57153358-57153112 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 185 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 78, 69 |
| Conread position: | 340-545 |
| Cow position: | chr11:84729244-84729446 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 59, 122 |
| Conread position: | 340-557 |
| Cow position: | chr11:77756449-77756236 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 59, 19 |
| Conread position: | 340-558 |
| Cow position: | chr11:24008406-24008623 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 60, 20 |
| Conread position: | 340-576 |
| Cow position: | chr11:77772383-77772158 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 58, 67 |
| Conread position: | 340-577 |
| Cow position: | chr11:57753072-57752838 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 59, 119 |
| Conread position: | 340-580 |
| Cow position: | chr11:44064188-44064429 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 340-581 |
| Cow position: | chr11:74171303-74171073 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 186 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 59, 64 |
| Conread position: | 340-584 |
| Cow position: | chr11:22851347-22851589 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 114 |
| Conread position: | 340-584 |
| Cow position: | chr11:25807430-25807189 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 106 |
| Conread position: | 341-578 |
| Cow position: | chr11:12791083-12791306 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 58, 89 |
| Conread position: | 341-583 |
| Cow position: | chr11:25972623-25972400 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 341-583 |
| Cow position: | chr11:77713348-77713114 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 58, 73 |
| Conread position: | 341-584 |
| Cow position: | chr11:15885607-15885845 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 180 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 343-578 |
| Cow position: | chr11:10877563-10877793 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 56, 104 |
| Conread position: | 344-566 |
| Cow position: | chr11:82529169-82529392 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 211 |
| Conread position: | 344-584 |
| Cow position: | chr11:43855919-43855685 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 54, 45 |
| Conread position: | 346-584 |
| Cow position: | chr11:11109794-11109555 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 53, 128 |
| Conread position: | 348-549 |
| Cow position: | chr11:19567355-19567551 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 51, 59 |
| Conread position: | 348-568 |
| Cow position: | chr11:35284417-35284627 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 51, 60 |
| Conread position: | 353-581 |
| Cow position: | chr11:55283209-55282974 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 49, 99 |
| Conread position: | 354-583 |
| Cow position: | chr11:70605701-70605925 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 48, 102 |
| Conread position: | 360-582 |
| Cow position: | chr11:30660614-30660837 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 361-559 |
| Cow position: | chr11:57062192-57062384 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 38, 91 |
| Conread position: | 361-575 |
| Cow position: | chr11:77763184-77762982 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 38, 46 |
| Conread position: | 370-566 |
| Cow position: | chr11:39830886-39830702 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 29, 83 |
| Conread position: | 376-581 |
| Cow position: | chr11:21909792-21909589 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 161 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 23, 32 |
| Conread position: | 377-584 |
| Cow position: | chr11:54204479-54204280 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 22, 14 |
| Conread position: | 382-582 |
| Cow position: | chr11:64101395-64101596 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 20, 193 |
| Conread position: | 395-582 |
| Cow position: | chr11:27817153-27816974 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 398-578 |
| Cow position: | chr11:27610794-27610970 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 108, 55 |
| Conread position: | 417-565 |
| Cow position: | chr11:81987732-81987586 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 56, 78 |
| Conread position: | 421-533 |
| Cow position: | chr11:9295245-9295134 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 426-583 |
| Cow position: | chr11:39166574-39166730 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 58, 6 |
| Conread position: | 429-569 |
| Cow position: | chr11:15374179-15374316 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 439-584 |
| Cow position: | chr11:16363990-16363845 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 100, 71 |
Show alignments to all cow chromosomes.