Cow genome map
| Conread name: | rjca18c_c23.y1 |
| Conread position: | 323-584 |
| Cow position: | chr13:22193727-22193979 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 76, 18 |
| Conread position: | 334-500 |
| Cow position: | chr13:24675991-24676152 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 65, 81 |
| Conread position: | 334-527 |
| Cow position: | chr13:20656652-20656853 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 65, 189 |
| Conread position: | 334-527 |
| Cow position: | chr13:43803248-43803447 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 334-584 |
| Cow position: | chr13:28605740-28605989 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 125 |
| Conread position: | 335-544 |
| Cow position: | chr13:18597037-18596832 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 166 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 64, 111 |
| Conread position: | 335-559 |
| Cow position: | chr13:46464492-46464276 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 200, 60 |
| Conread position: | 335-564 |
| Cow position: | chr13:11223095-11222874 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 131, 51 |
| Conread position: | 335-573 |
| Cow position: | chr13:47325565-47325338 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 63, 124 |
| Conread position: | 335-577 |
| Cow position: | chr13:25955300-25955058 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 179 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 64, 180 |
| Conread position: | 335-578 |
| Cow position: | chr13:51142684-51142453 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 335-580 |
| Cow position: | chr13:51241050-51241295 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 117 |
| Conread position: | 335-581 |
| Cow position: | chr13:59997473-59997225 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 116, 175 |
| Conread position: | 335-583 |
| Cow position: | chr13:34885302-34885551 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 64, 127 |
| Conread position: | 335-584 |
| Cow position: | chr13:698715-698945 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 335-584 |
| Cow position: | chr13:19115739-19115978 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 65, 119 |
| Conread position: | 336-486 |
| Cow position: | chr13:11778196-11778339 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 63, 78 |
| Conread position: | 339-579 |
| Cow position: | chr13:44144071-44143841 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 199, 26 |
| Conread position: | 340-579 |
| Cow position: | chr13:5619351-5619111 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 59, 139 |
| Conread position: | 340-584 |
| Cow position: | chr13:4796156-4796399 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 37, 100 |
| Conread position: | 340-584 |
| Cow position: | chr13:12213806-12214052 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 113, 23 |
| Conread position: | 340-584 |
| Cow position: | chr13:57611552-57611795 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 59, 135 |
| Conread position: | 341-491 |
| Cow position: | chr13:26943139-26943288 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 109, 48 |
| Conread position: | 341-493 |
| Cow position: | chr13:39487656-39487813 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 58, 117 |
| Conread position: | 341-569 |
| Cow position: | chr13:17169529-17169747 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 341-575 |
| Cow position: | chr13:22984785-22985021 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 176 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 58, 8 |
| Conread position: | 342-584 |
| Cow position: | chr13:10854683-10854444 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 130, 57 |
| Conread position: | 344-582 |
| Cow position: | chr13:2416382-2416615 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 56, 64 |
| Conread position: | 345-584 |
| Cow position: | chr13:38361960-38361724 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 182 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 55, 48 |
| Conread position: | 353-584 |
| Cow position: | chr13:55407010-55407236 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 46, 28 |
| Conread position: | 354-581 |
| Cow position: | chr13:14080104-14079876 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 355-576 |
| Cow position: | chr13:24404025-24403809 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 44, 15 |
| Conread position: | 356-583 |
| Cow position: | chr13:34264749-34264538 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 43, 74 |
| Conread position: | 361-551 |
| Cow position: | chr13:9103264-9103080 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 38, 96 |
| Conread position: | 361-584 |
| Cow position: | chr13:48580635-48580420 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 176 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 38, 68 |
| Conread position: | 363-572 |
| Cow position: | chr13:12325450-12325646 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 36, 101 |
| Conread position: | 375-557 |
| Cow position: | chr13:38535026-38534852 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 24, 34 |
| Conread position: | 394-581 |
| Cow position: | chr13:14708752-14708938 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 5, 22 |
| Conread position: | 394-584 |
| Cow position: | chr13:18839453-18839637 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 5, 35 |
| Conread position: | 415-584 |
| Cow position: | chr13:15489927-15490094 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 416-584 |
| Cow position: | chr13:30951063-30950892 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 74, 36 |
| Conread position: | 429-583 |
| Cow position: | chr13:37498123-37498273 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 125, 33 |
| Conread position: | 429-584 |
| Cow position: | chr13:20876671-20876516 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 133, 22 |
| Conread position: | 431-584 |
| Cow position: | chr13:27795821-27795969 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 434-584 |
| Cow position: | chr13:57746270-57746422 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 463-583 |
| Cow position: | chr13:51177603-51177723 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.