Cow genome map
| Conread name: | rjca18c_c23.y1 |
| Conread position: | 335-521 |
| Cow position: | chr15:35042365-35042551 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 64, 117 |
| Conread position: | 335-526 |
| Cow position: | chr15:36864571-36864383 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 64, 140 |
| Conread position: | 335-582 |
| Cow position: | chr15:14810942-14810709 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 177 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 60, 127 |
| Conread position: | 335-583 |
| Cow position: | chr15:1888062-1888302 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 134, 14 |
| Conread position: | 335-583 |
| Cow position: | chr15:11997737-11997987 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 191 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 51, 75 |
| Conread position: | 335-584 |
| Cow position: | chr15:12283157-12283396 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 187 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 64, 94 |
| Conread position: | 335-584 |
| Cow position: | chr15:16669438-16669192 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 28 |
| Conread position: | 335-584 |
| Cow position: | chr15:21802536-21802771 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 64, 35 |
| Conread position: | 335-584 |
| Cow position: | chr15:25683682-25683929 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 117 |
| Conread position: | 335-584 |
| Cow position: | chr15:52131826-52132071 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 337-581 |
| Cow position: | chr15:11287402-11287157 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 9 |
| Conread position: | 340-574 |
| Cow position: | chr15:9428036-9427797 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 20, 46 |
| Conread position: | 340-581 |
| Cow position: | chr15:38902470-38902244 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 110, 58 |
| Conread position: | 340-581 |
| Cow position: | chr15:53728285-53728049 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 59, 34 |
| Conread position: | 340-582 |
| Cow position: | chr15:30570125-30570370 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 340-583 |
| Cow position: | chr15:53712828-53713068 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 341-584 |
| Cow position: | chr15:9437492-9437727 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 19, 114 |
| Conread position: | 341-584 |
| Cow position: | chr15:44797275-44797035 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 58, 118 |
| Conread position: | 343-583 |
| Cow position: | chr15:39809499-39809736 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 38 |
| Conread position: | 344-519 |
| Cow position: | chr15:36582563-36582393 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 11, 126 |
| Conread position: | 344-581 |
| Cow position: | chr15:16972145-16971919 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 55, 64 |
| Conread position: | 344-584 |
| Cow position: | chr15:49279475-49279234 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 60, 55 |
| Conread position: | 345-584 |
| Cow position: | chr15:8630335-8630564 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 54, 71 |
| Conread position: | 346-584 |
| Cow position: | chr15:12048740-12048513 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 348-584 |
| Cow position: | chr15:5912390-5912153 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 178 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 51, 114 |
| Conread position: | 348-584 |
| Cow position: | chr15:23265784-23266006 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 99, 41 |
| Conread position: | 353-547 |
| Cow position: | chr15:1892182-1891994 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 46, 30 |
| Conread position: | 355-584 |
| Cow position: | chr15:28608172-28607939 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 44, 24 |
| Conread position: | 362-584 |
| Cow position: | chr15:14610242-14610014 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 86, 37 |
| Conread position: | 363-584 |
| Cow position: | chr15:582852-583075 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 15, 58 |
| Conread position: | 364-578 |
| Cow position: | chr15:17642216-17642424 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 35, 44 |
| Conread position: | 365-556 |
| Cow position: | chr15:40065906-40066093 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 34, 43 |
| Conread position: | 368-582 |
| Cow position: | chr15:21182013-21182224 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 32, 108 |
| Conread position: | 370-504 |
| Cow position: | chr15:39360160-39360026 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 29, 46 |
| Conread position: | 370-570 |
| Cow position: | chr15:53335369-53335570 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 370-583 |
| Cow position: | chr15:31935554-31935762 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 139, 56 |
| Conread position: | 372-584 |
| Cow position: | chr15:13081335-13081552 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 28, 9 |
| Conread position: | 373-581 |
| Cow position: | chr15:52868845-52869046 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 374-584 |
| Cow position: | chr15:10581432-10581636 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 25, 85 |
| Conread position: | 375-584 |
| Cow position: | chr15:6523420-6523215 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 25, 34 |
| Conread position: | 378-584 |
| Cow position: | chr15:49271964-49272162 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 21, 12 |
| Conread position: | 397-584 |
| Cow position: | chr15:37633410-37633596 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 415-579 |
| Cow position: | chr15:16989557-16989718 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 104, 48 |
| Conread position: | 419-584 |
| Cow position: | chr15:7443863-7443696 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 33, 65 |
| Conread position: | 430-584 |
| Cow position: | chr15:35067009-35067163 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 38, 22 |
| Conread position: | 445-584 |
| Cow position: | chr15:41807446-41807310 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 460-583 |
| Cow position: | chr15:36278086-36277963 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 467-584 |
| Cow position: | chr15:1992771-1992888 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.