Cow genome map
| Conread name: | rjca18c_c23.y1 |
| Conread position: | 334-584 |
| Cow position: | chr17:34319789-34319532 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 65, 36 |
| Conread position: | 335-492 |
| Cow position: | chr17:25117325-25117483 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 335-558 |
| Cow position: | chr17:3849087-3849305 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 64, 125 |
| Conread position: | 335-572 |
| Cow position: | chr17:6980396-6980147 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 335-584 |
| Cow position: | chr17:7210976-7211214 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 335-584 |
| Cow position: | chr17:18417883-18417634 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 64, 26 |
| Conread position: | 340-523 |
| Cow position: | chr17:1309905-1309719 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 340-576 |
| Cow position: | chr17:13703655-13703888 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 59, 74 |
| Conread position: | 340-578 |
| Cow position: | chr17:2736078-2736310 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 59, 37 |
| Conread position: | 340-582 |
| Cow position: | chr17:19789511-19789279 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 59, 43 |
| Conread position: | 340-584 |
| Cow position: | chr17:12842624-12842866 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 59, 176 |
| Conread position: | 340-584 |
| Cow position: | chr17:28847288-28847045 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 119 |
| Conread position: | 341-579 |
| Cow position: | chr17:701758-701993 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 46, 27 |
| Conread position: | 341-584 |
| Cow position: | chr17:32451300-32451053 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 58, 20 |
| Conread position: | 341-584 |
| Cow position: | chr17:33271414-33271179 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 186 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 58, 18 |
| Conread position: | 342-584 |
| Cow position: | chr17:17500988-17500765 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 57, 62 |
| Conread position: | 343-578 |
| Cow position: | chr17:3223724-3223947 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 56, 46 |
| Conread position: | 344-483 |
| Cow position: | chr17:36149779-36149918 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 55, 64 |
| Conread position: | 350-547 |
| Cow position: | chr17:15450868-15451064 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 49, 58 |
| Conread position: | 364-584 |
| Cow position: | chr17:11225568-11225784 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 35, 95 |
| Conread position: | 367-578 |
| Cow position: | chr17:43143409-43143199 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 7, 86 |
| Conread position: | 373-584 |
| Cow position: | chr17:10850956-10850756 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 26, 89 |
| Conread position: | 377-584 |
| Cow position: | chr17:404254-404466 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 23, 76 |
| Conread position: | 381-555 |
| Cow position: | chr17:30330729-30330892 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 393-583 |
| Cow position: | chr17:26481234-26481424 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 6, 74 |
| Conread position: | 402-583 |
| Cow position: | chr17:10261537-10261710 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 415-576 |
| Cow position: | chr17:37166540-37166393 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 78, 38 |
| Conread position: | 448-584 |
| Cow position: | chr17:13235977-13236113 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.