Cow genome map
| Conread name: | rjca18c_c23.y1 |
| Conread position: | 323-574 |
| Cow position: | chr3:34165373-34165124 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 76, 135 |
| Conread position: | 332-584 |
| Cow position: | chr3:12311360-12311613 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 188 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 67, 166 |
| Conread position: | 333-570 |
| Cow position: | chr3:39385812-39385583 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 66, 48 |
| Conread position: | 334-584 |
| Cow position: | chr3:60854556-60854310 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 184 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 65, 129 |
| Conread position: | 335-520 |
| Cow position: | chr3:64081755-64081936 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 64, 87 |
| Conread position: | 335-544 |
| Cow position: | chr3:56164054-56164260 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 64, 124 |
| Conread position: | 335-562 |
| Cow position: | chr3:36515056-36514846 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 64, 48 |
| Conread position: | 335-580 |
| Cow position: | chr3:32773486-32773727 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 64, 45 |
| Conread position: | 335-582 |
| Cow position: | chr3:45641796-45642026 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 64, 89 |
| Conread position: | 335-583 |
| Cow position: | chr3:60947902-60947660 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 190 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 64, 24 |
| Conread position: | 335-584 |
| Cow position: | chr3:3690403-3690170 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 67, 34 |
| Conread position: | 335-584 |
| Cow position: | chr3:15091172-15091401 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 335-584 |
| Cow position: | chr3:23274678-23274436 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 189 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 64, 30 |
| Conread position: | 335-584 |
| Cow position: | chr3:24532106-24532357 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 153 |
| Conread position: | 335-584 |
| Cow position: | chr3:26581781-26581535 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 190 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 64, 33 |
| Conread position: | 335-584 |
| Cow position: | chr3:27347072-27346828 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 64, 48 |
| Conread position: | 335-584 |
| Cow position: | chr3:35029129-35028870 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 64, 48 |
| Conread position: | 338-584 |
| Cow position: | chr3:17519498-17519260 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 61, 70 |
| Conread position: | 340-542 |
| Cow position: | chr3:73418348-73418547 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 22, 46 |
| Conread position: | 340-549 |
| Cow position: | chr3:5084835-5084632 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 22, 69 |
| Conread position: | 340-555 |
| Cow position: | chr3:79315476-79315689 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 168 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 59, 22 |
| Conread position: | 340-556 |
| Cow position: | chr3:47497813-47498023 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 59, 8 |
| Conread position: | 340-569 |
| Cow position: | chr3:13526925-13527143 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 59, 28 |
| Conread position: | 340-569 |
| Cow position: | chr3:43967119-43966895 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 23, 108 |
| Conread position: | 340-576 |
| Cow position: | chr3:78442594-78442359 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 119 |
| Conread position: | 340-581 |
| Cow position: | chr3:27633711-27633472 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 28 |
| Conread position: | 340-582 |
| Cow position: | chr3:23478525-23478765 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 59, 76 |
| Conread position: | 340-584 |
| Cow position: | chr3:2284983-2285221 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 186 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 59, 76 |
| Conread position: | 340-584 |
| Cow position: | chr3:22054328-22054101 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 59, 25 |
| Conread position: | 341-579 |
| Cow position: | chr3:12531824-12531588 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 110 |
| Conread position: | 341-582 |
| Cow position: | chr3:77468250-77468493 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 58, 75 |
| Conread position: | 341-584 |
| Cow position: | chr3:56042425-56042193 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 58, 91 |
| Conread position: | 342-548 |
| Cow position: | chr3:65392357-65392567 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 52, 113 |
| Conread position: | 342-583 |
| Cow position: | chr3:55107117-55106885 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 57, 38 |
| Conread position: | 346-584 |
| Cow position: | chr3:68127398-68127622 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 53, 62 |
| Conread position: | 347-584 |
| Cow position: | chr3:1549612-1549846 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 52, 167 |
| Conread position: | 348-584 |
| Cow position: | chr3:73154259-73154483 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 21, 54 |
| Conread position: | 350-566 |
| Cow position: | chr3:81919610-81919402 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 26, 44 |
| Conread position: | 354-580 |
| Cow position: | chr3:43004497-43004271 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 45, 83 |
| Conread position: | 361-569 |
| Cow position: | chr3:58348791-58348994 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 38, 92 |
| Conread position: | 361-576 |
| Cow position: | chr3:77589709-77589911 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 38, 54 |
| Conread position: | 362-582 |
| Cow position: | chr3:63334393-63334181 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 9, 47 |
| Conread position: | 362-584 |
| Cow position: | chr3:74724125-74723903 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 67 |
| Conread position: | 382-581 |
| Cow position: | chr3:52657833-52658022 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 166, 12 |
| Conread position: | 383-583 |
| Cow position: | chr3:1339241-1339436 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 16, 76 |
| Conread position: | 384-584 |
| Cow position: | chr3:52817339-52817537 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 15, 80 |
| Conread position: | 392-583 |
| Cow position: | chr3:31286555-31286371 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 7, 24 |
| Conread position: | 398-553 |
| Cow position: | chr3:27879576-27879424 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 96, 60 |
| Conread position: | 415-584 |
| Cow position: | chr3:69148172-69148007 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 46, 11 |
| Conread position: | 434-584 |
| Cow position: | chr3:41860975-41860828 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 437-584 |
| Cow position: | chr3:5317374-5317226 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 17, 78 |
| Conread position: | 438-577 |
| Cow position: | chr3:28707338-28707471 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
Show alignments to all cow chromosomes.