Cow genome map
| Conread name: | rjca18c_c23.y1 |
| Conread position: | 326-578 |
| Cow position: | chr5:20717454-20717693 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 182, 27 |
| Conread position: | 334-572 |
| Cow position: | chr5:13575410-13575180 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 179 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 335-456 |
| Cow position: | chr5:54606208-54606325 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 335-493 |
| Cow position: | chr5:25925535-25925379 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 64, 124 |
| Conread position: | 335-544 |
| Cow position: | chr5:57127793-57127994 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 113, 62 |
| Conread position: | 335-555 |
| Cow position: | chr5:56109822-56109599 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 335-569 |
| Cow position: | chr5:26562481-26562709 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 335-569 |
| Cow position: | chr5:56741998-56742223 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 179, 54 |
| Conread position: | 335-577 |
| Cow position: | chr5:71278990-71279229 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 186 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 64, 29 |
| Conread position: | 335-578 |
| Cow position: | chr5:11235915-11236156 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 28, 123 |
| Conread position: | 335-579 |
| Cow position: | chr5:60968771-60969017 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 134, 158 |
| Conread position: | 335-582 |
| Cow position: | chr5:38274111-38274364 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 335-582 |
| Cow position: | chr5:67463551-67463794 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 187 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 64, 73 |
| Conread position: | 335-584 |
| Cow position: | chr5:9025515-9025764 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 335-584 |
| Cow position: | chr5:37048398-37048625 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 64, 73 |
| Conread position: | 335-584 |
| Cow position: | chr5:51076288-51076041 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 108, 91 |
| Conread position: | 335-584 |
| Cow position: | chr5:51953211-51953460 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 183 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 65, 162 |
| Conread position: | 338-579 |
| Cow position: | chr5:21145889-21145649 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 70 |
| Conread position: | 340-486 |
| Cow position: | chr5:26161655-26161513 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 59, 7 |
| Conread position: | 340-513 |
| Cow position: | chr5:48223947-48223785 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 340-558 |
| Cow position: | chr5:23234815-23235023 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 59, 35 |
| Conread position: | 340-558 |
| Cow position: | chr5:39206951-39206739 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 62, 68 |
| Conread position: | 340-566 |
| Cow position: | chr5:12329350-12329126 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 59, 76 |
| Conread position: | 340-569 |
| Cow position: | chr5:15808577-15808349 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 174 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 59, 76 |
| Conread position: | 340-579 |
| Cow position: | chr5:63620895-63621125 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 59, 71 |
| Conread position: | 340-584 |
| Cow position: | chr5:15882111-15881869 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 59, 108 |
| Conread position: | 340-584 |
| Cow position: | chr5:27679485-27679240 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 111, 49 |
| Conread position: | 340-584 |
| Cow position: | chr5:35748885-35749119 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 342-574 |
| Cow position: | chr5:19299132-19298906 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 57, 133 |
| Conread position: | 343-567 |
| Cow position: | chr5:9585399-9585179 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 168, 65 |
| Conread position: | 343-580 |
| Cow position: | chr5:58842457-58842680 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 60, 104 |
| Conread position: | 347-583 |
| Cow position: | chr5:28770608-28770836 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 347-584 |
| Cow position: | chr5:14072229-14072000 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 53, 82 |
| Conread position: | 348-584 |
| Cow position: | chr5:20648909-20648679 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 81 |
| Conread position: | 348-584 |
| Cow position: | chr5:47698039-47697806 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 179 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 51, 162 |
| Conread position: | 355-582 |
| Cow position: | chr5:12581067-12581275 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 363-584 |
| Cow position: | chr5:56826408-56826626 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 36, 53 |
| Conread position: | 364-584 |
| Cow position: | chr5:18379618-18379824 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 35, 72 |
| Conread position: | 368-579 |
| Cow position: | chr5:53922180-53921976 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 31, 94 |
| Conread position: | 370-579 |
| Cow position: | chr5:33516410-33516195 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 370-584 |
| Cow position: | chr5:29029712-29029926 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 29, 158 |
| Conread position: | 370-584 |
| Cow position: | chr5:31551206-31551411 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 372-572 |
| Cow position: | chr5:70253037-70253238 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 27, 164 |
| Conread position: | 372-578 |
| Cow position: | chr5:1286736-1286943 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 27, 126 |
| Conread position: | 372-584 |
| Cow position: | chr5:27493109-27493317 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 373-582 |
| Cow position: | chr5:60725638-60725842 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 26, 18 |
| Conread position: | 375-583 |
| Cow position: | chr5:1304845-1304646 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 24, 67 |
| Conread position: | 398-569 |
| Cow position: | chr5:9232867-9232702 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 398-581 |
| Cow position: | chr5:67579454-67579632 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 90, 53 |
| Conread position: | 398-584 |
| Cow position: | chr5:37624474-37624658 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 408-584 |
| Cow position: | chr5:42587497-42587324 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 410-578 |
| Cow position: | chr5:31944004-31944169 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 130, 18 |
| Conread position: | 415-578 |
| Cow position: | chr5:12602310-12602469 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 45, 61 |
| Conread position: | 455-584 |
| Cow position: | chr5:67001893-67002023 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 58, 0 |
Show alignments to all cow chromosomes.