Cow genome map
| Conread name: | rjca18c_c23.y1 |
| Conread position: | 333-584 |
| Cow position: | chr6:31687835-31687593 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 188 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 67, 7 |
| Conread position: | 335-523 |
| Cow position: | chr6:3374069-3373879 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 66, 95 |
| Conread position: | 335-533 |
| Cow position: | chr6:812052-811852 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 335-550 |
| Cow position: | chr6:33311463-33311671 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 64, 83 |
| Conread position: | 335-553 |
| Cow position: | chr6:20332666-20332882 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 19, 33 |
| Conread position: | 335-578 |
| Cow position: | chr6:35831900-35832146 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 42, 95 |
| Conread position: | 335-579 |
| Cow position: | chr6:3017824-3018063 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 64 |
| Conread position: | 335-580 |
| Cow position: | chr6:41557837-41558078 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 181 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 64, 119 |
| Conread position: | 335-583 |
| Cow position: | chr6:45692305-45692070 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 335-583 |
| Cow position: | chr6:55662086-55662331 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 64, 46 |
| Conread position: | 335-584 |
| Cow position: | chr6:14280011-14280259 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 190 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 64, 33 |
| Conread position: | 335-584 |
| Cow position: | chr6:44389893-44389649 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 64, 73 |
| Conread position: | 335-584 |
| Cow position: | chr6:53416610-53416356 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 193 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 55, 126 |
| Conread position: | 335-584 |
| Cow position: | chr6:58593778-58593546 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 336-570 |
| Cow position: | chr6:62327901-62328126 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 63, 7 |
| Conread position: | 336-584 |
| Cow position: | chr6:37085251-37085492 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 186 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 64, 42 |
| Conread position: | 340-572 |
| Cow position: | chr6:39293534-39293755 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 59, 68 |
| Conread position: | 340-582 |
| Cow position: | chr6:6635503-6635738 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 59, 75 |
| Conread position: | 340-584 |
| Cow position: | chr6:23891911-23892152 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 59, 87 |
| Conread position: | 340-584 |
| Cow position: | chr6:35698061-35697818 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 36, 74 |
| Conread position: | 341-542 |
| Cow position: | chr6:62754130-62753930 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 58, 133 |
| Conread position: | 341-584 |
| Cow position: | chr6:29078093-29078326 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 344-583 |
| Cow position: | chr6:6722507-6722744 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 55, 191 |
| Conread position: | 344-584 |
| Cow position: | chr6:45617064-45616838 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 55, 64 |
| Conread position: | 345-566 |
| Cow position: | chr6:5500701-5500481 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 54, 79 |
| Conread position: | 348-582 |
| Cow position: | chr6:40241054-40241278 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 51, 98 |
| Conread position: | 348-584 |
| Cow position: | chr6:34556878-34557109 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 51, 61 |
| Conread position: | 359-581 |
| Cow position: | chr6:39917545-39917762 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 40, 91 |
| Conread position: | 361-584 |
| Cow position: | chr6:35126725-35126514 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 38, 47 |
| Conread position: | 370-584 |
| Cow position: | chr6:27711019-27711230 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 29, 184 |
| Conread position: | 371-578 |
| Cow position: | chr6:19715851-19715652 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 28, 20 |
| Conread position: | 372-584 |
| Cow position: | chr6:11159606-11159395 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 14, 89 |
| Conread position: | 372-584 |
| Cow position: | chr6:55398196-55398396 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 27, 36 |
| Conread position: | 374-583 |
| Cow position: | chr6:24496536-24496330 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 25, 85 |
| Conread position: | 376-583 |
| Cow position: | chr6:14162217-14162020 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 23, 40 |
| Conread position: | 377-584 |
| Cow position: | chr6:50501993-50502192 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 22, 75 |
| Conread position: | 381-584 |
| Cow position: | chr6:1077019-1076822 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 72, 84 |
| Conread position: | 391-500 |
| Cow position: | chr6:12808821-12808713 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 90 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 8, 38 |
| Conread position: | 397-576 |
| Cow position: | chr6:1940080-1939901 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 53, 156 |
| Conread position: | 403-583 |
| Cow position: | chr6:20748808-20748984 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 60, 14 |
| Conread position: | 438-572 |
| Cow position: | chr6:24260353-24260220 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 463-581 |
| Cow position: | chr6:3936147-3936029 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.