Cow genome map
| Conread name: | rjca18c_c23.y1 |
| Conread position: | 322-584 |
| Cow position: | chr9:45140617-45140356 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 213 |
| Conread position: | 326-580 |
| Cow position: | chr9:19835665-19835920 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 8, 66 |
| Conread position: | 331-571 |
| Cow position: | chr9:7670328-7670102 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 68, 9 |
| Conread position: | 335-480 |
| Cow position: | chr9:46657934-46658078 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 64, 111 |
| Conread position: | 335-567 |
| Cow position: | chr9:58125891-58125661 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 178 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 64, 79 |
| Conread position: | 335-578 |
| Cow position: | chr9:9077397-9077624 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 335-579 |
| Cow position: | chr9:4985656-4985897 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 64, 73 |
| Conread position: | 335-579 |
| Cow position: | chr9:41318273-41318517 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 65, 94 |
| Conread position: | 335-581 |
| Cow position: | chr9:18570677-18570918 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 186 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 64, 124 |
| Conread position: | 335-581 |
| Cow position: | chr9:25502800-25503033 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 65, 31 |
| Conread position: | 335-582 |
| Cow position: | chr9:62721136-62721373 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 335-584 |
| Cow position: | chr9:1517582-1517820 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 26, 18 |
| Conread position: | 335-584 |
| Cow position: | chr9:1527089-1527335 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 117 |
| Conread position: | 335-584 |
| Cow position: | chr9:12199197-12199444 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 57, 84 |
| Conread position: | 335-584 |
| Cow position: | chr9:34188689-34188448 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 111, 58 |
| Conread position: | 335-584 |
| Cow position: | chr9:34763143-34763392 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 117 |
| Conread position: | 337-582 |
| Cow position: | chr9:2638617-2638850 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 62, 16 |
| Conread position: | 337-583 |
| Cow position: | chr9:22376971-22376727 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 193 |
| Conread position: | 340-499 |
| Cow position: | chr9:35527412-35527262 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 60, 28 |
| Conread position: | 340-526 |
| Cow position: | chr9:12565087-12564914 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 59, 42 |
| Conread position: | 340-533 |
| Cow position: | chr9:53597100-53597299 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 340-578 |
| Cow position: | chr9:12183430-12183194 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 107 |
| Conread position: | 340-582 |
| Cow position: | chr9:6557526-6557290 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 14, 39 |
| Conread position: | 340-584 |
| Cow position: | chr9:8234303-8234077 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 340-584 |
| Cow position: | chr9:13072072-13071828 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 25, 173 |
| Conread position: | 340-584 |
| Cow position: | chr9:47200514-47200745 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 106, 60 |
| Conread position: | 341-583 |
| Cow position: | chr9:15855336-15855570 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 58, 67 |
| Conread position: | 341-584 |
| Cow position: | chr9:4834685-4834452 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 53, 74 |
| Conread position: | 344-584 |
| Cow position: | chr9:25812605-25812828 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 55, 85 |
| Conread position: | 375-584 |
| Cow position: | chr9:15282844-15282639 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 24, 77 |
| Conread position: | 393-580 |
| Cow position: | chr9:19081947-19082128 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 7, 84 |
| Conread position: | 394-584 |
| Cow position: | chr9:39994110-39994297 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 5, 22 |
| Conread position: | 398-581 |
| Cow position: | chr9:64606091-64606268 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 137, 9 |
| Conread position: | 405-583 |
| Cow position: | chr9:40923010-40923187 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 110, 56 |
| Conread position: | 408-579 |
| Cow position: | chr9:59114089-59113914 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 417-578 |
| Cow position: | chr9:42366454-42366297 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 34, 45 |
Show alignments to all cow chromosomes.