Cow genome map
| Conread name: | rjca18c_c23.y1 |
| Conread position: | 334-584 |
| Cow position: | chrX:4631030-4630786 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 188 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 65, 82 |
| Conread position: | 335-504 |
| Cow position: | chrX:24952021-24951859 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 64, 22 |
| Conread position: | 335-577 |
| Cow position: | chrX:40353652-40353895 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 179 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 25, 74 |
| Conread position: | 335-583 |
| Cow position: | chrX:18814513-18814764 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 64, 119 |
| Conread position: | 335-583 |
| Cow position: | chrX:19017898-19017645 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 335-584 |
| Cow position: | chrX:2147663-2147899 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 73 |
| Conread position: | 335-584 |
| Cow position: | chrX:2186600-2186846 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 185 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 64, 74 |
| Conread position: | 335-584 |
| Cow position: | chrX:4590297-4590539 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 187 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 64, 49 |
| Conread position: | 335-584 |
| Cow position: | chrX:12688732-12688482 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 64, 74 |
| Conread position: | 335-584 |
| Cow position: | chrX:13403400-13403159 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 64, 117 |
| Conread position: | 335-584 |
| Cow position: | chrX:19127290-19127053 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 64, 82 |
| Conread position: | 335-584 |
| Cow position: | chrX:20505053-20505296 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 335-584 |
| Cow position: | chrX:21816614-21816856 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 42, 65 |
| Conread position: | 335-584 |
| Cow position: | chrX:25453527-25453762 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 64, 53 |
| Conread position: | 335-584 |
| Cow position: | chrX:40698587-40698811 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 338-533 |
| Cow position: | chrX:11982947-11983132 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 339-583 |
| Cow position: | chrX:37956915-37957152 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 60, 29 |
| Conread position: | 340-575 |
| Cow position: | chrX:4601292-4601072 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 340-582 |
| Cow position: | chrX:4440198-4440439 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 170 |
| Conread position: | 340-583 |
| Cow position: | chrX:25921435-25921214 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 340-584 |
| Cow position: | chrX:1330446-1330208 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 59, 68 |
| Conread position: | 340-584 |
| Cow position: | chrX:4019580-4019331 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 59, 85 |
| Conread position: | 340-584 |
| Cow position: | chrX:9910402-9910168 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 59, 76 |
| Conread position: | 340-584 |
| Cow position: | chrX:11675421-11675662 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 185 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 59, 113 |
| Conread position: | 340-584 |
| Cow position: | chrX:21885757-21885509 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 59, 7 |
| Conread position: | 340-584 |
| Cow position: | chrX:37236356-37236592 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 53 |
| Conread position: | 341-534 |
| Cow position: | chrX:4597366-4597170 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 58, 168 |
| Conread position: | 341-569 |
| Cow position: | chrX:27458381-27458157 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 58, 118 |
| Conread position: | 341-572 |
| Cow position: | chrX:43647404-43647181 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 58, 45 |
| Conread position: | 341-578 |
| Cow position: | chrX:956830-957073 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 37, 73 |
| Conread position: | 341-584 |
| Cow position: | chrX:4625258-4625503 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 200 |
| Conread position: | 341-584 |
| Cow position: | chrX:10534432-10534670 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 105, 66 |
| Conread position: | 341-584 |
| Cow position: | chrX:18700007-18699769 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 58, 121 |
| Conread position: | 341-584 |
| Cow position: | chrX:37980739-37980973 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 58, 77 |
| Conread position: | 342-584 |
| Cow position: | chrX:37137923-37137678 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 67, 80 |
| Conread position: | 344-582 |
| Cow position: | chrX:6472063-6472298 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 179 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 55, 75 |
| Conread position: | 356-573 |
| Cow position: | chrX:5956968-5956755 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 43, 98 |
| Conread position: | 362-504 |
| Cow position: | chrX:25106595-25106736 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 37, 65 |
| Conread position: | 369-584 |
| Cow position: | chrX:23253833-23253627 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 5, 40 |
| Conread position: | 371-584 |
| Cow position: | chrX:37749031-37749247 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 378-581 |
| Cow position: | chrX:11851380-11851188 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 12, 50 |
| Conread position: | 382-582 |
| Cow position: | chrX:6672170-6672367 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 28, 18 |
| Conread position: | 387-558 |
| Cow position: | chrX:4948101-4947934 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 12, 60 |
| Conread position: | 389-569 |
| Cow position: | chrX:35552746-35552920 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 10, 22 |
| Conread position: | 389-584 |
| Cow position: | chrX:18518438-18518626 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 10, 27 |
| Conread position: | 396-584 |
| Cow position: | chrX:16817056-16817233 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 410-584 |
| Cow position: | chrX:40350322-40350488 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 412-584 |
| Cow position: | chrX:1427692-1427864 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 39, 144 |
| Conread position: | 460-584 |
| Cow position: | chrX:24286526-24286646 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 463-584 |
| Cow position: | chrX:19391804-19391684 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 35, 93 |
Show alignments to all cow chromosomes.