Cow genome map
| Conread name: | rlin01_c13r1.y1 |
| Conread position: | 1-102 |
| Cow position: | chr1:89083061-89082960 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 84 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-147 |
| Cow position: | chr1:4414257-4414413 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 1-166 |
| Cow position: | chr1:71079007-71079182 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 88, 64 |
| Conread position: | 1-175 |
| Cow position: | chr1:55705299-55705488 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 1-193 |
| Cow position: | chr1:84239162-84239352 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 102, 162 |
| Conread position: | 1-198 |
| Cow position: | chr1:81563687-81563483 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 100, 151 |
| Conread position: | 1-200 |
| Cow position: | chr1:14379584-14379782 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 88, 134 |
| Conread position: | 1-202 |
| Cow position: | chr1:75744811-75744606 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 1-227 |
| Cow position: | chr1:40599994-40599773 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 182 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 102, 163 |
| Conread position: | 1-262 |
| Cow position: | chr1:88652581-88652317 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 168 |
| Conread position: | 1-284 |
| Cow position: | chr1:48105483-48105772 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 168 |
| Conread position: | 1-286 |
| Cow position: | chr1:1403530-1403801 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 103, 48 |
| Conread position: | 1-286 |
| Cow position: | chr1:82884439-82884723 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 1-291 |
| Cow position: | chr1:3456819-3456529 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 10 |
| Conread position: | 1-291 |
| Cow position: | chr1:41697009-41696718 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 172 |
| Conread position: | 1-291 |
| Cow position: | chr1:57575808-57576105 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 174 |
| Conread position: | 1-291 |
| Cow position: | chr1:89349913-89349639 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 1-291 |
| Cow position: | chr1:99136480-99136773 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 168 |
| Conread position: | 2-105 |
| Cow position: | chr1:85647832-85647935 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 84 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-160 |
| Cow position: | chr1:52956202-52956041 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 3-160 |
| Cow position: | chr1:78809829-78809665 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 3-181 |
| Cow position: | chr1:4294004-4293825 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 28, 34 |
| Conread position: | 3-190 |
| Cow position: | chr1:95057004-95056813 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 95, 161 |
| Conread position: | 3-208 |
| Cow position: | chr1:21835892-21835686 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 90, 8 |
| Conread position: | 3-208 |
| Cow position: | chr1:57635410-57635207 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 77, 156 |
| Conread position: | 3-208 |
| Cow position: | chr1:64302299-64302492 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 3-216 |
| Cow position: | chr1:99095311-99095097 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 28, 34 |
| Conread position: | 3-230 |
| Cow position: | chr1:72286108-72286331 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 180 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 77, 159 |
| Conread position: | 3-233 |
| Cow position: | chr1:19545150-19545393 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 101, 201 |
| Conread position: | 3-243 |
| Cow position: | chr1:24528659-24528892 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 157 |
| Conread position: | 3-248 |
| Cow position: | chr1:33811878-33811634 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 160 |
| Conread position: | 3-254 |
| Cow position: | chr1:22448638-22448890 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 163 |
| Conread position: | 3-254 |
| Cow position: | chr1:63434857-63435109 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 52, 66 |
| Conread position: | 3-272 |
| Cow position: | chr1:19466005-19465735 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 88, 67 |
| Conread position: | 3-280 |
| Cow position: | chr1:39418172-39418449 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 164 |
| Conread position: | 3-284 |
| Cow position: | chr1:45288923-45289207 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 70 |
| Conread position: | 3-286 |
| Cow position: | chr1:68951576-68951305 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 101, 162 |
| Conread position: | 3-287 |
| Cow position: | chr1:3137878-3137587 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 56, 152 |
| Conread position: | 3-287 |
| Cow position: | chr1:72011860-72012142 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 221 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 58, 129 |
| Conread position: | 3-287 |
| Cow position: | chr1:92433949-92433682 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 211 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 3-287 |
| Cow position: | chr1:100706082-100705797 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 62, 167 |
| Conread position: | 3-289 |
| Cow position: | chr1:5873022-5873314 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 166 |
| Conread position: | 3-291 |
| Cow position: | chr1:20002290-20002595 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 226 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 9, 199 |
| Conread position: | 3-291 |
| Cow position: | chr1:31348491-31348775 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 218 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 56, 161 |
| Conread position: | 3-291 |
| Cow position: | chr1:44136517-44136794 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 94, 159 |
| Conread position: | 3-291 |
| Cow position: | chr1:53425124-53424849 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 208 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 58, 85 |
| Conread position: | 3-291 |
| Cow position: | chr1:54732519-54732786 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 85, 65 |
| Conread position: | 3-291 |
| Cow position: | chr1:61724073-61724363 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 224 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 43, 169 |
| Conread position: | 3-298 |
| Cow position: | chr1:71045703-71045402 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 163 |
| Conread position: | 3-299 |
| Cow position: | chr1:45673658-45673353 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 61, 84 |
| Conread position: | 4-206 |
| Cow position: | chr1:4291108-4290900 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 61, 170 |
| Conread position: | 4-291 |
| Cow position: | chr1:94226604-94226891 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 56 |
| Conread position: | 5-198 |
| Cow position: | chr1:24655910-24655710 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 50, 166 |
| Conread position: | 5-202 |
| Cow position: | chr1:54478271-54478068 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 99, 164 |
| Conread position: | 5-202 |
| Cow position: | chr1:93810376-93810189 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 5-291 |
| Cow position: | chr1:44125700-44125992 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 183 |
| Conread position: | 5-291 |
| Cow position: | chr1:100551916-100551619 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 50, 163 |
| Conread position: | 10-291 |
| Cow position: | chr1:22827109-22826824 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 27 |
| Conread position: | 14-223 |
| Cow position: | chr1:32631405-32631195 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 51, 156 |
| Conread position: | 15-266 |
| Cow position: | chr1:21934239-21934497 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 85, 210 |
| Conread position: | 15-266 |
| Cow position: | chr1:41056619-41056366 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 50 |
| Conread position: | 16-201 |
| Cow position: | chr1:36932093-36931906 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 84, 148 |
| Conread position: | 18-243 |
| Cow position: | chr1:77099615-77099835 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 18-291 |
| Cow position: | chr1:54258498-54258229 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 145 |
| Conread position: | 323-496 |
| Cow position: | chr1:72544746-72544572 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 80, 26 |
Show alignments to all cow chromosomes.