Cow genome map
| Conread name: | rlin01_c13r1.y1 |
| Conread position: | 1-102 |
| Cow position: | chr10:52695808-52695909 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 85 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 1-167 |
| Cow position: | chr10:37668237-37668415 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 100, 152 |
| Conread position: | 1-200 |
| Cow position: | chr10:2185248-2185049 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 30, 38 |
| Conread position: | 1-200 |
| Cow position: | chr10:35791851-35791639 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 26, 18 |
| Conread position: | 1-208 |
| Cow position: | chr10:8923859-8923644 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 100, 172 |
| Conread position: | 1-208 |
| Cow position: | chr10:35026399-35026189 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 173 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 99, 162 |
| Conread position: | 1-208 |
| Cow position: | chr10:38014286-38014082 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 168 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 1-221 |
| Cow position: | chr10:19094569-19094344 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 182 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 64, 143 |
| Conread position: | 1-225 |
| Cow position: | chr10:54504525-54504296 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 99, 8 |
| Conread position: | 1-229 |
| Cow position: | chr10:15462410-15462185 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 1-230 |
| Cow position: | chr10:32503369-32503138 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 187 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 64, 166 |
| Conread position: | 1-285 |
| Cow position: | chr10:2613287-2613013 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 1-285 |
| Cow position: | chr10:51944279-51943995 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 165 |
| Conread position: | 1-287 |
| Cow position: | chr10:8923198-8922911 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 100, 172 |
| Conread position: | 1-287 |
| Cow position: | chr10:22527983-22528270 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 163 |
| Conread position: | 1-287 |
| Cow position: | chr10:34661392-34661689 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 227 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 15, 37 |
| Conread position: | 1-288 |
| Cow position: | chr10:22520243-22520534 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 228 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 1-291 |
| Cow position: | chr10:6530117-6529828 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 1-291 |
| Cow position: | chr10:20447015-20446731 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 1-291 |
| Cow position: | chr10:24971692-24971969 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 76 |
| Conread position: | 1-291 |
| Cow position: | chr10:37529345-37529654 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 1-291 |
| Cow position: | chr10:47773650-47773362 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 168 |
| Conread position: | 1-293 |
| Cow position: | chr10:10148575-10148254 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 240 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 2-167 |
| Cow position: | chr10:45370974-45370800 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 29, 35 |
| Conread position: | 2-207 |
| Cow position: | chr10:25699570-25699376 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 3-95 |
| Cow position: | chr10:35856431-35856523 (view UCSC Genome Browser custom track) |
| Alignm length: | 93 |
| Alignm identity: | 78 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-102 |
| Cow position: | chr10:33732949-33733048 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 82 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-150 |
| Cow position: | chr10:60722230-60722383 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 3-170 |
| Cow position: | chr10:58690812-58690645 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 9, 79 |
| Conread position: | 3-171 |
| Cow position: | chr10:9445095-9445273 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 3-174 |
| Cow position: | chr10:52113752-52113927 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 101, 57 |
| Conread position: | 3-191 |
| Cow position: | chr10:25045769-25045956 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 85, 16 |
| Conread position: | 3-202 |
| Cow position: | chr10:57461273-57461081 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 84, 106 |
| Conread position: | 3-206 |
| Cow position: | chr10:24871807-24871599 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 98, 158 |
| Conread position: | 3-206 |
| Cow position: | chr10:48388353-48388568 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 99, 52 |
| Conread position: | 3-208 |
| Cow position: | chr10:37235631-37235842 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 95, 180 |
| Conread position: | 3-275 |
| Cow position: | chr10:17584121-17584403 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 158, 226 |
| Conread position: | 3-280 |
| Cow position: | chr10:56475385-56475106 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 34 |
| Conread position: | 3-281 |
| Cow position: | chr10:35857136-35857437 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 226 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 98, 156 |
| Conread position: | 3-285 |
| Cow position: | chr10:12315075-12314792 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 214 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 110, 92 |
| Conread position: | 3-286 |
| Cow position: | chr10:15294283-15293992 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 86, 191 |
| Conread position: | 3-287 |
| Cow position: | chr10:3998822-3998541 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 213 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 88, 162 |
| Conread position: | 3-287 |
| Cow position: | chr10:59164176-59164454 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 196, 101 |
| Conread position: | 3-287 |
| Cow position: | chr10:59664058-59664337 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 213 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 86, 52 |
| Conread position: | 3-290 |
| Cow position: | chr10:20132607-20132898 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 145 |
| Conread position: | 3-291 |
| Cow position: | chr10:1488758-1488473 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 101 |
| Conread position: | 3-291 |
| Cow position: | chr10:10048603-10048314 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 62, 166 |
| Conread position: | 3-291 |
| Cow position: | chr10:21462157-21461867 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 164 |
| Conread position: | 3-291 |
| Cow position: | chr10:30746319-30746029 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 34 |
| Conread position: | 3-291 |
| Cow position: | chr10:54948216-54948495 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 56, 158 |
| Conread position: | 3-291 |
| Cow position: | chr10:61839514-61839226 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 216 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 94, 57 |
| Conread position: | 3-291 |
| Cow position: | chr10:63940691-63940407 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 223 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 86, 63 |
| Conread position: | 3-294 |
| Cow position: | chr10:36002117-36001829 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 154 |
| Conread position: | 3-294 |
| Cow position: | chr10:52046782-52046489 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 124 |
| Conread position: | 3-300 |
| Cow position: | chr10:37528686-37528990 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 167 |
| Conread position: | 4-208 |
| Cow position: | chr10:48259313-48259521 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 56, 166 |
| Conread position: | 5-222 |
| Cow position: | chr10:34607476-34607253 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 93, 53 |
| Conread position: | 5-285 |
| Cow position: | chr10:31027729-31028022 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 218 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 97, 229 |
| Conread position: | 5-287 |
| Cow position: | chr10:14639446-14639720 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 213 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 83, 49 |
| Conread position: | 5-291 |
| Cow position: | chr10:65132876-65132585 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 165 |
| Conread position: | 5-338 |
| Cow position: | chr10:3985344-3985010 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 157, 83 |
| Conread position: | 6-102 |
| Cow position: | chr10:10120114-10120018 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 83 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-294 |
| Cow position: | chr10:32775024-32774739 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 156 |
| Conread position: | 7-222 |
| Cow position: | chr10:51696657-51696450 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 170 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 82, 98 |
| Conread position: | 10-291 |
| Cow position: | chr10:55580352-55580632 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 216 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 92, 159 |
| Conread position: | 12-287 |
| Cow position: | chr10:9675548-9675826 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 208 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 25, 19 |
| Conread position: | 15-204 |
| Cow position: | chr10:37444313-37444503 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 48, 150 |
| Conread position: | 15-270 |
| Cow position: | chr10:35901236-35900986 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 85, 112 |
| Conread position: | 15-287 |
| Cow position: | chr10:805103-804824 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 215 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 88, 55 |
| Conread position: | 15-291 |
| Cow position: | chr10:32928673-32928396 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 44, 153 |
| Conread position: | 15-291 |
| Cow position: | chr10:34906619-34906337 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 212 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 45, 158 |
| Conread position: | 17-282 |
| Cow position: | chr10:55733695-55733964 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 20 |
Show alignments to all cow chromosomes.