Cow genome map

Conread name: rlin01_c13r1.y1

Conread position: 1-159
Cow position: chr11:82940695-82940860 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 129
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 58, 35

Conread position: 1-160
Cow position: chr11:2917659-2917823 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 131
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 30, 36

Conread position: 1-160
Cow position: chr11:47899206-47899033 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 137
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 103, 0

Conread position: 1-208
Cow position: chr11:19508222-19508011 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 171
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 102, 167

Conread position: 1-208
Cow position: chr11:25165369-25165160 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 167
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 102, 168

Conread position: 1-208
Cow position: chr11:46580282-46580081 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 163
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 30, 36

Conread position: 1-208
Cow position: chr11:50778300-50778084 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 169
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 99, 171

Conread position: 1-223
Cow position: chr11:41983526-41983746 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 161
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 88, 163

Conread position: 1-258
Cow position: chr11:59155952-59156210 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 196
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 30, 36

Conread position: 1-266
Cow position: chr11:955292-955021 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 30

Conread position: 1-285
Cow position: chr11:35881837-35881544 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 209
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 99, 168

Conread position: 1-285
Cow position: chr11:52297294-52297582 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 172

Conread position: 1-286
Cow position: chr11:62490359-62490071 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 218
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 88, 52

Conread position: 1-287
Cow position: chr11:16251320-16251618 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 171

Conread position: 1-287
Cow position: chr11:40818711-40819009 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 36

Conread position: 1-287
Cow position: chr11:44636831-44637125 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 172

Conread position: 1-291
Cow position: chr11:27248419-27248124 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 179

Conread position: 1-291
Cow position: chr11:42793046-42793328 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 227
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 99, 164

Conread position: 1-291
Cow position: chr11:65430986-65430707 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 227
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 97, 76

Conread position: 2-102
Cow position: chr11:47850953-47850852 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 85
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 13, 0

Conread position: 2-287
Cow position: chr11:80923398-80923700 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 217
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 25, 35

Conread position: 3-100
Cow position: chr11:65607766-65607863 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 81
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 3-151
Cow position: chr11:30954924-30954773 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 52, 102

Conread position: 3-156
Cow position: chr11:36658896-36659052 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 123
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 101, 50

Conread position: 3-158
Cow position: chr11:13043221-13043383 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 62, 27

Conread position: 3-174
Cow position: chr11:3726213-3726029 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 138
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 57, 170

Conread position: 3-174
Cow position: chr11:63516751-63516566 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 140
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 98, 0

Conread position: 3-192
Cow position: chr11:45898128-45898325 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 151
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 101, 129

Conread position: 3-196
Cow position: chr11:8105707-8105509 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 155
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 56, 167

Conread position: 3-198
Cow position: chr11:62016351-62016545 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 143
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 101, 153

Conread position: 3-201
Cow position: chr11:75748358-75748157 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 155
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 56, 38

Conread position: 3-204
Cow position: chr11:65826817-65827013 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 153
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 99, 67

Conread position: 3-206
Cow position: chr11:48932660-48932866 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 165
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 23, 33

Conread position: 3-208
Cow position: chr11:1668601-1668389 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 158
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 35, 47

Conread position: 3-208
Cow position: chr11:21844208-21844418 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 163
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 98, 164

Conread position: 3-235
Cow position: chr11:18572726-18572494 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 169
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 84, 160

Conread position: 3-236
Cow position: chr11:9837175-9837414 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 180
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 56, 164

Conread position: 3-257
Cow position: chr11:43914136-43913888 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 11

Conread position: 3-271
Cow position: chr11:47165215-47165482 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 208
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 86, 165

Conread position: 3-283
Cow position: chr11:63847773-63847493 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 207
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 84, 52

Conread position: 3-283
Cow position: chr11:85764863-85764599 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 200
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 71, 52

Conread position: 3-287
Cow position: chr11:44642362-44642645 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 33

Conread position: 3-287
Cow position: chr11:64044166-64043885 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 187
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 154, 101

Conread position: 3-287
Cow position: chr11:79019598-79019897 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 219
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 27, 35

Conread position: 3-289
Cow position: chr11:33349771-33350068 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 170

Conread position: 3-294
Cow position: chr11:77705680-77705393 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 56

Conread position: 3-294
Cow position: chr11:77750847-77751137 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 162

Conread position: 3-328
Cow position: chr11:26483639-26483319 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 163

Conread position: 4-250
Cow position: chr11:70609710-70609464 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 184
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 23, 32

Conread position: 4-273
Cow position: chr11:81614713-81614979 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 203
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 50, 158

Conread position: 4-294
Cow position: chr11:21894228-21894521 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 224
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 60, 168

Conread position: 5-134
Cow position: chr11:65762677-65762814 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 113
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 97, 0

Conread position: 5-162
Cow position: chr11:4663123-4663285 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 119
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 88, 0

Conread position: 5-167
Cow position: chr11:62155549-62155376 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 134
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 60, 0

Conread position: 5-287
Cow position: chr11:41577091-41577369 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 159

Conread position: 5-291
Cow position: chr11:77745333-77745632 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 76

Conread position: 5-294
Cow position: chr11:17889800-17890093 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 228
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 54, 160

Conread position: 5-294
Cow position: chr11:76114577-76114281 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 165

Conread position: 5-307
Cow position: chr11:64932377-64932682 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 228
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 22, 32

Conread position: 6-287
Cow position: chr11:47586426-47586711 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 162

Conread position: 8-201
Cow position: chr11:45646675-45646869 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 154
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 98, 161

Conread position: 12-245
Cow position: chr11:68909934-68910175 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 189
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 47, 77

Conread position: 15-158
Cow position: chr11:26144183-26144326 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 116
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 44, 89

Conread position: 15-286
Cow position: chr11:35874079-35874337 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 212
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 88, 136

Conread position: 15-287
Cow position: chr11:62225899-62225615 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 207
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 15, 22

Conread position: 16-197
Cow position: chr11:17227734-17227914 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 139
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 91, 148

Conread position: 16-230
Cow position: chr11:36182598-36182381 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 175
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 71, 149

Conread position: 16-291
Cow position: chr11:3833441-3833716 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 52

Conread position: 18-234
Cow position: chr11:7315215-7315436 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 171
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 42, 151

Conread position: 20-198
Cow position: chr11:75355518-75355334 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 141
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 77, 148

Show alignments to all cow chromosomes.