Cow genome map
| Conread name: | rlin01_c13r1.y1 |
| Conread position: | 1-102 |
| Cow position: | chr12:30210388-30210287 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 85 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 1-105 |
| Cow position: | chr12:25177677-25177781 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 87 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 1-166 |
| Cow position: | chr12:5635541-5635717 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 1-172 |
| Cow position: | chr12:8710732-8710558 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 88, 163 |
| Conread position: | 1-189 |
| Cow position: | chr12:22285213-22285386 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 1-200 |
| Cow position: | chr12:5905960-5905760 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 102, 49 |
| Conread position: | 1-213 |
| Cow position: | chr12:18518572-18518361 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 48, 35 |
| Conread position: | 1-239 |
| Cow position: | chr12:44622260-44622020 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 1-275 |
| Cow position: | chr12:19691328-19691604 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 220 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 1-287 |
| Cow position: | chr12:15530964-15530662 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 30, 41 |
| Conread position: | 1-291 |
| Cow position: | chr12:31532504-31532801 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 217 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 29, 18 |
| Conread position: | 1-291 |
| Cow position: | chr12:37770782-37770483 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 174 |
| Conread position: | 1-294 |
| Cow position: | chr12:30170574-30170271 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 227 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 2-167 |
| Cow position: | chr12:42879600-42879434 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 98, 84 |
| Conread position: | 2-285 |
| Cow position: | chr12:7919953-7919684 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 211 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 53, 87 |
| Conread position: | 2-294 |
| Cow position: | chr12:17031520-17031215 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 219 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 102, 259 |
| Conread position: | 3-159 |
| Cow position: | chr12:29161909-29162073 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 57, 91 |
| Conread position: | 3-197 |
| Cow position: | chr12:32391753-32391551 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 79, 170 |
| Conread position: | 3-201 |
| Cow position: | chr12:29694142-29694335 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 56, 81 |
| Conread position: | 3-201 |
| Cow position: | chr12:40270188-40270384 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 56, 123 |
| Conread position: | 3-202 |
| Cow position: | chr12:3510471-3510266 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 104, 170 |
| Conread position: | 3-202 |
| Cow position: | chr12:6687764-6687570 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 88, 11 |
| Conread position: | 3-202 |
| Cow position: | chr12:28582600-28582791 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 3-214 |
| Cow position: | chr12:30805758-30805543 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 28, 34 |
| Conread position: | 3-240 |
| Cow position: | chr12:22260920-22261151 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 101, 118 |
| Conread position: | 3-246 |
| Cow position: | chr12:16851105-16851351 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 86, 171 |
| Conread position: | 3-278 |
| Cow position: | chr12:15938362-15938640 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 213 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 55, 167 |
| Conread position: | 3-280 |
| Cow position: | chr12:8868973-8869277 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 220 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 98, 286 |
| Conread position: | 3-287 |
| Cow position: | chr12:34473720-34473984 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 105, 83 |
| Conread position: | 3-291 |
| Cow position: | chr12:3039410-3039127 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 67 |
| Conread position: | 3-291 |
| Cow position: | chr12:7000700-7000992 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 213 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 58, 86 |
| Conread position: | 3-291 |
| Cow position: | chr12:31429666-31429944 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 154 |
| Conread position: | 3-313 |
| Cow position: | chr12:28010995-28011309 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 161 |
| Conread position: | 3-328 |
| Cow position: | chr12:40910385-40910716 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 168 |
| Conread position: | 4-291 |
| Cow position: | chr12:19154712-19154996 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 161 |
| Conread position: | 5-175 |
| Cow position: | chr12:30662045-30662227 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 62, 167 |
| Conread position: | 5-253 |
| Cow position: | chr12:18076436-18076186 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 54, 142 |
| Conread position: | 5-291 |
| Cow position: | chr12:19869371-19869084 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 162 |
| Conread position: | 7-287 |
| Cow position: | chr12:17080160-17079877 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 218 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 24, 30 |
| Conread position: | 8-205 |
| Cow position: | chr12:40307597-40307394 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 22, 29 |
| Conread position: | 15-285 |
| Cow position: | chr12:3579176-3578902 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 78, 156 |
| Conread position: | 15-287 |
| Cow position: | chr12:18550774-18550512 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 16, 22 |
| Conread position: | 16-201 |
| Cow position: | chr12:25805219-25805408 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 85, 150 |
Show alignments to all cow chromosomes.