Cow genome map

Conread name: rlin01_c13r1.y1

Conread position: 1-102
Cow position: chr13:8374731-8374630 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 87
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 30, 36

Conread position: 1-174
Cow position: chr13:36877113-36877295 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 130
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 103, 168

Conread position: 1-179
Cow position: chr13:18172379-18172571 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 146
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 30, 36

Conread position: 1-223
Cow position: chr13:55295582-55295359 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 182
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 92, 166

Conread position: 1-285
Cow position: chr13:18835233-18835515 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 159

Conread position: 1-287
Cow position: chr13:41253663-41253956 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 206
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 88, 143

Conread position: 1-287
Cow position: chr13:52922133-52922433 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 215
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 102, 163

Conread position: 1-291
Cow position: chr13:971852-971561 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 163

Conread position: 1-291
Cow position: chr13:22085703-22085425 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 158

Conread position: 1-291
Cow position: chr13:34263328-34263047 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 36

Conread position: 1-291
Cow position: chr13:34281717-34282015 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 172

Conread position: 1-291
Cow position: chr13:45023171-45022850 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 239
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 30, 36

Conread position: 1-306
Cow position: chr13:890129-889833 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 13

Conread position: 2-170
Cow position: chr13:17439728-17439545 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 138
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 101, 0

Conread position: 2-286
Cow position: chr13:20684079-20683793 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 35

Conread position: 2-287
Cow position: chr13:3701480-3701763 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 76

Conread position: 2-291
Cow position: chr13:41806817-41807101 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 227
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 99, 145

Conread position: 3-138
Cow position: chr13:22025666-22025521 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 98, 0

Conread position: 3-150
Cow position: chr13:24230252-24230413 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 61, 0

Conread position: 3-154
Cow position: chr13:9593551-9593711 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 125
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 101, 0

Conread position: 3-160
Cow position: chr13:20536543-20536710 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 56, 0

Conread position: 3-193
Cow position: chr13:43184829-43184635 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 151
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 101, 73

Conread position: 3-200
Cow position: chr13:22115749-22115947 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 150
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 60, 164

Conread position: 3-208
Cow position: chr13:48251943-48251740 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 162
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 28, 34

Conread position: 3-248
Cow position: chr13:38484874-38485119 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 195
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 52, 162

Conread position: 3-248
Cow position: chr13:51821847-51821596 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 191
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 98, 71

Conread position: 3-257
Cow position: chr13:45353086-45353343 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 193
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 56, 169

Conread position: 3-274
Cow position: chr13:20649941-20649664 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 205
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 56, 167

Conread position: 3-274
Cow position: chr13:26480170-26479899 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 205
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 36, 46

Conread position: 3-291
Cow position: chr13:311473-311767 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 161

Conread position: 3-291
Cow position: chr13:2414071-2414359 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 215
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 56, 161

Conread position: 3-291
Cow position: chr13:21176279-21175988 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 221
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 28, 34

Conread position: 3-291
Cow position: chr13:30651220-30651510 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 55

Conread position: 3-291
Cow position: chr13:37517094-37516802 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 167

Conread position: 3-291
Cow position: chr13:43762213-43762506 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 13

Conread position: 3-291
Cow position: chr13:54237397-54237672 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 212
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 79, 55

Conread position: 3-298
Cow position: chr13:19178317-19178614 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 163

Conread position: 3-298
Cow position: chr13:25531745-25531449 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 163

Conread position: 5-160
Cow position: chr13:21904708-21904872 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 54, 0

Conread position: 5-174
Cow position: chr13:48944715-48944884 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 133
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 60, 84

Conread position: 5-214
Cow position: chr13:54381892-54381677 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 162
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 57, 167

Conread position: 5-290
Cow position: chr13:60430030-60429747 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 161

Conread position: 5-291
Cow position: chr13:51940781-51941064 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 159

Conread position: 11-291
Cow position: chr13:20863963-20863683 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 220
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 20, 26

Conread position: 12-204
Cow position: chr13:17970976-17970787 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 153
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 92, 151

Conread position: 15-204
Cow position: chr13:53574025-53574205 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 137
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 81, 90

Conread position: 15-287
Cow position: chr13:11820649-11820908 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 0

Conread position: 15-290
Cow position: chr13:6616697-6616414 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 35

Conread position: 15-310
Cow position: chr13:6189561-6189277 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 22

Show alignments to all cow chromosomes.