Cow genome map
| Conread name: | rlin01_c13r1.y1 |
| Conread position: | 1-140 |
| Cow position: | chr15:23696766-23696623 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 1-201 |
| Cow position: | chr15:11658424-11658216 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 100, 169 |
| Conread position: | 1-208 |
| Cow position: | chr15:40957723-40957935 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 83, 35 |
| Conread position: | 1-233 |
| Cow position: | chr15:39598387-39598625 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 101, 119 |
| Conread position: | 1-248 |
| Cow position: | chr15:41583055-41583312 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 100, 168 |
| Conread position: | 1-271 |
| Cow position: | chr15:22532382-22532657 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 214 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 1-281 |
| Cow position: | chr15:17870141-17869865 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 159 |
| Conread position: | 1-287 |
| Cow position: | chr15:24044952-24044657 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 10 |
| Conread position: | 1-291 |
| Cow position: | chr15:15707966-15707680 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 158 |
| Conread position: | 1-291 |
| Cow position: | chr15:26421455-26421163 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 37, 172 |
| Conread position: | 1-291 |
| Cow position: | chr15:51822286-51822581 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 3-160 |
| Cow position: | chr15:21421085-21421256 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 60, 127 |
| Conread position: | 3-174 |
| Cow position: | chr15:29810264-29810436 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 86, 54 |
| Conread position: | 3-177 |
| Cow position: | chr15:50322742-50322928 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 3-204 |
| Cow position: | chr15:21893928-21894134 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 91, 167 |
| Conread position: | 3-207 |
| Cow position: | chr15:39599588-39599795 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 88, 165 |
| Conread position: | 3-208 |
| Cow position: | chr15:17100564-17100360 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 169 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 56, 160 |
| Conread position: | 3-208 |
| Cow position: | chr15:23768118-23767909 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 55, 166 |
| Conread position: | 3-221 |
| Cow position: | chr15:11363031-11362809 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 101, 162 |
| Conread position: | 3-252 |
| Cow position: | chr15:5571492-5571236 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 57, 166 |
| Conread position: | 3-286 |
| Cow position: | chr15:5498885-5498595 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 164 |
| Conread position: | 3-286 |
| Cow position: | chr15:19403127-19403409 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 164 |
| Conread position: | 3-287 |
| Cow position: | chr15:13554500-13554774 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 86 |
| Conread position: | 3-287 |
| Cow position: | chr15:19119458-19119182 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 141 |
| Conread position: | 3-291 |
| Cow position: | chr15:29792763-29792487 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 99, 8 |
| Conread position: | 3-291 |
| Cow position: | chr15:30985641-30985358 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 191 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 3-291 |
| Cow position: | chr15:47821956-47822226 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 86, 46 |
| Conread position: | 3-308 |
| Cow position: | chr15:22939178-22938890 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 226 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 94, 155 |
| Conread position: | 4-163 |
| Cow position: | chr15:23114987-23115150 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 58, 147 |
| Conread position: | 5-202 |
| Cow position: | chr15:19771280-19771477 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 60, 129 |
| Conread position: | 5-206 |
| Cow position: | chr15:37931613-37931415 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 90, 81 |
| Conread position: | 5-291 |
| Cow position: | chr15:36782179-36781870 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 228 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 6-283 |
| Cow position: | chr15:30982074-30982345 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 131 |
| Conread position: | 11-160 |
| Cow position: | chr15:11629722-11629568 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 15-169 |
| Cow position: | chr15:36390577-36390731 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-335 |
| Cow position: | chr15:20370295-20369988 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 18 |
| Conread position: | 20-287 |
| Cow position: | chr15:28038920-28039187 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 154 |
| Conread position: | 21-287 |
| Cow position: | chr15:16583541-16583277 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 143 |
Show alignments to all cow chromosomes.