Cow genome map
Conread name: | rlin01_c13r1.y1 |
Conread position: | 1-149 |
Cow position: | chr16:10592379-10592226 (view UCSC Genome Browser custom track) |
Alignm length: | 155 |
Alignm identity: | 125 |
Alignm E-value: | 7e-31 |
Alignm gaps (pig, cow): | 29, 36 |
Conread position: | 1-208 |
Cow position: | chr16:11422255-11422034 (view UCSC Genome Browser custom track) |
Alignm length: | 223 |
Alignm identity: | 158 |
Alignm E-value: | 3e-24 |
Alignm gaps (pig, cow): | 30, 36 |
Conread position: | 1-220 |
Cow position: | chr16:35937282-35937057 (view UCSC Genome Browser custom track) |
Alignm length: | 232 |
Alignm identity: | 171 |
Alignm E-value: | 3e-32 |
Alignm gaps (pig, cow): | 77, 169 |
Conread position: | 1-287 |
Cow position: | chr16:33226594-33226877 (view UCSC Genome Browser custom track) |
Alignm length: | 292 |
Alignm identity: | 226 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 30, 36 |
Conread position: | 1-287 |
Cow position: | chr16:38708886-38709165 (view UCSC Genome Browser custom track) |
Alignm length: | 294 |
Alignm identity: | 228 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 100, 154 |
Conread position: | 1-291 |
Cow position: | chr16:16177760-16177470 (view UCSC Genome Browser custom track) |
Alignm length: | 302 |
Alignm identity: | 228 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 26, 36 |
Conread position: | 1-291 |
Cow position: | chr16:35188199-35187904 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 228 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 62, 166 |
Conread position: | 1-291 |
Cow position: | chr16:39474201-39474488 (view UCSC Genome Browser custom track) |
Alignm length: | 302 |
Alignm identity: | 225 |
Alignm E-value: | 9.80909e-45 |
Alignm gaps (pig, cow): | 94, 37 |
Conread position: | 1-291 |
Cow position: | chr16:45139616-45139318 (view UCSC Genome Browser custom track) |
Alignm length: | 308 |
Alignm identity: | 232 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 30, 36 |
Conread position: | 1-291 |
Cow position: | chr16:49141620-49141908 (view UCSC Genome Browser custom track) |
Alignm length: | 295 |
Alignm identity: | 228 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 88, 162 |
Conread position: | 1-294 |
Cow position: | chr16:16424659-16424957 (view UCSC Genome Browser custom track) |
Alignm length: | 306 |
Alignm identity: | 231 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 26, 35 |
Conread position: | 1-294 |
Cow position: | chr16:42078896-42079191 (view UCSC Genome Browser custom track) |
Alignm length: | 307 |
Alignm identity: | 242 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 30, 36 |
Conread position: | 1-315 |
Cow position: | chr16:33645957-33645645 (view UCSC Genome Browser custom track) |
Alignm length: | 328 |
Alignm identity: | 247 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 30, 10 |
Conread position: | 1-315 |
Cow position: | chr16:43275966-43275646 (view UCSC Genome Browser custom track) |
Alignm length: | 327 |
Alignm identity: | 243 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 100, 168 |
Conread position: | 2-294 |
Cow position: | chr16:4059298-4059014 (view UCSC Genome Browser custom track) |
Alignm length: | 299 |
Alignm identity: | 218 |
Alignm E-value: | 8.00001e-42 |
Alignm gaps (pig, cow): | 79, 163 |
Conread position: | 2-309 |
Cow position: | chr16:7505031-7504732 (view UCSC Genome Browser custom track) |
Alignm length: | 308 |
Alignm identity: | 234 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 100, 0 |
Conread position: | 3-102 |
Cow position: | chr16:31348825-31348924 (view UCSC Genome Browser custom track) |
Alignm length: | 100 |
Alignm identity: | 83 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 3-126 |
Cow position: | chr16:41689639-41689516 (view UCSC Genome Browser custom track) |
Alignm length: | 125 |
Alignm identity: | 98 |
Alignm E-value: | 9e-23 |
Alignm gaps (pig, cow): | 42, 85 |
Conread position: | 3-134 |
Cow position: | chr16:14685447-14685588 (view UCSC Genome Browser custom track) |
Alignm length: | 142 |
Alignm identity: | 109 |
Alignm E-value: | 8e-22 |
Alignm gaps (pig, cow): | 98, 0 |
Conread position: | 3-152 |
Cow position: | chr16:43800976-43801126 (view UCSC Genome Browser custom track) |
Alignm length: | 152 |
Alignm identity: | 116 |
Alignm E-value: | 4e-26 |
Alignm gaps (pig, cow): | 64, 109 |
Conread position: | 3-160 |
Cow position: | chr16:45047687-45047849 (view UCSC Genome Browser custom track) |
Alignm length: | 163 |
Alignm identity: | 125 |
Alignm E-value: | 6e-29 |
Alignm gaps (pig, cow): | 101, 0 |
Conread position: | 3-160 |
Cow position: | chr16:45535123-45534958 (view UCSC Genome Browser custom track) |
Alignm length: | 168 |
Alignm identity: | 130 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 28, 34 |
Conread position: | 3-173 |
Cow position: | chr16:10148223-10148045 (view UCSC Genome Browser custom track) |
Alignm length: | 181 |
Alignm identity: | 135 |
Alignm E-value: | 1e-25 |
Alignm gaps (pig, cow): | 62, 166 |
Conread position: | 3-173 |
Cow position: | chr16:13233006-13233183 (view UCSC Genome Browser custom track) |
Alignm length: | 178 |
Alignm identity: | 127 |
Alignm E-value: | 8e-22 |
Alignm gaps (pig, cow): | 86, 0 |
Conread position: | 3-192 |
Cow position: | chr16:42633808-42633999 (view UCSC Genome Browser custom track) |
Alignm length: | 199 |
Alignm identity: | 144 |
Alignm E-value: | 8e-22 |
Alignm gaps (pig, cow): | 24, 33 |
Conread position: | 3-193 |
Cow position: | chr16:37452673-37452868 (view UCSC Genome Browser custom track) |
Alignm length: | 201 |
Alignm identity: | 144 |
Alignm E-value: | 8e-21 |
Alignm gaps (pig, cow): | 51, 128 |
Conread position: | 3-197 |
Cow position: | chr16:8933481-8933675 (view UCSC Genome Browser custom track) |
Alignm length: | 206 |
Alignm identity: | 154 |
Alignm E-value: | 3e-24 |
Alignm gaps (pig, cow): | 23, 33 |
Conread position: | 3-206 |
Cow position: | chr16:18402627-18402431 (view UCSC Genome Browser custom track) |
Alignm length: | 205 |
Alignm identity: | 158 |
Alignm E-value: | 5e-37 |
Alignm gaps (pig, cow): | 100, 85 |
Conread position: | 3-221 |
Cow position: | chr16:29380199-29379974 (view UCSC Genome Browser custom track) |
Alignm length: | 232 |
Alignm identity: | 173 |
Alignm E-value: | 9e-33 |
Alignm gaps (pig, cow): | 57, 169 |
Conread position: | 3-224 |
Cow position: | chr16:3614688-3614465 (view UCSC Genome Browser custom track) |
Alignm length: | 231 |
Alignm identity: | 164 |
Alignm E-value: | 4e-26 |
Alignm gaps (pig, cow): | 86, 57 |
Conread position: | 3-225 |
Cow position: | chr16:3246264-3246476 (view UCSC Genome Browser custom track) |
Alignm length: | 226 |
Alignm identity: | 170 |
Alignm E-value: | 1e-33 |
Alignm gaps (pig, cow): | 56, 8 |
Conread position: | 3-226 |
Cow position: | chr16:33752139-33751911 (view UCSC Genome Browser custom track) |
Alignm length: | 235 |
Alignm identity: | 170 |
Alignm E-value: | 6e-29 |
Alignm gaps (pig, cow): | 62, 165 |
Conread position: | 3-229 |
Cow position: | chr16:13578919-13579131 (view UCSC Genome Browser custom track) |
Alignm length: | 227 |
Alignm identity: | 164 |
Alignm E-value: | 7e-30 |
Alignm gaps (pig, cow): | 52, 0 |
Conread position: | 3-258 |
Cow position: | chr16:13611511-13611770 (view UCSC Genome Browser custom track) |
Alignm length: | 266 |
Alignm identity: | 187 |
Alignm E-value: | 2e-30 |
Alignm gaps (pig, cow): | 93, 68 |
Conread position: | 3-287 |
Cow position: | chr16:32132468-32132188 (view UCSC Genome Browser custom track) |
Alignm length: | 293 |
Alignm identity: | 222 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 62, 163 |
Conread position: | 3-287 |
Cow position: | chr16:52855081-52855366 (view UCSC Genome Browser custom track) |
Alignm length: | 296 |
Alignm identity: | 215 |
Alignm E-value: | 8.00001e-42 |
Alignm gaps (pig, cow): | 62, 159 |
Conread position: | 3-288 |
Cow position: | chr16:31159629-31159917 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 227 |
Alignm E-value: | 9.80909e-45 |
Alignm gaps (pig, cow): | 55, 179 |
Conread position: | 3-289 |
Cow position: | chr16:7499003-7498721 (view UCSC Genome Browser custom track) |
Alignm length: | 290 |
Alignm identity: | 215 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 80, 159 |
Conread position: | 3-290 |
Cow position: | chr16:20025389-20025074 (view UCSC Genome Browser custom track) |
Alignm length: | 316 |
Alignm identity: | 224 |
Alignm E-value: | 1e-33 |
Alignm gaps (pig, cow): | 97, 0 |
Conread position: | 3-291 |
Cow position: | chr16:5415815-5416102 (view UCSC Genome Browser custom track) |
Alignm length: | 296 |
Alignm identity: | 216 |
Alignm E-value: | 4.2039e-45 |
Alignm gaps (pig, cow): | 40, 114 |
Conread position: | 3-291 |
Cow position: | chr16:18205903-18205611 (view UCSC Genome Browser custom track) |
Alignm length: | 299 |
Alignm identity: | 225 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 195, 153 |
Conread position: | 3-291 |
Cow position: | chr16:23738122-23737835 (view UCSC Genome Browser custom track) |
Alignm length: | 297 |
Alignm identity: | 213 |
Alignm E-value: | 2e-40 |
Alignm gaps (pig, cow): | 56, 160 |
Conread position: | 3-291 |
Cow position: | chr16:30027796-30027518 (view UCSC Genome Browser custom track) |
Alignm length: | 292 |
Alignm identity: | 213 |
Alignm E-value: | 9.80909e-45 |
Alignm gaps (pig, cow): | 56, 78 |
Conread position: | 3-291 |
Cow position: | chr16:30209698-30209430 (view UCSC Genome Browser custom track) |
Alignm length: | 294 |
Alignm identity: | 211 |
Alignm E-value: | 2e-31 |
Alignm gaps (pig, cow): | 56, 116 |
Conread position: | 3-291 |
Cow position: | chr16:44676815-44676541 (view UCSC Genome Browser custom track) |
Alignm length: | 291 |
Alignm identity: | 219 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 196, 90 |
Conread position: | 3-291 |
Cow position: | chr16:53224871-53225153 (view UCSC Genome Browser custom track) |
Alignm length: | 291 |
Alignm identity: | 211 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 158 |
Conread position: | 3-293 |
Cow position: | chr16:4910584-4910880 (view UCSC Genome Browser custom track) |
Alignm length: | 306 |
Alignm identity: | 225 |
Alignm E-value: | 4.2039e-45 |
Alignm gaps (pig, cow): | 57, 171 |
Conread position: | 3-293 |
Cow position: | chr16:9790688-9790977 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 214 |
Alignm E-value: | 1e-34 |
Alignm gaps (pig, cow): | 56, 164 |
Conread position: | 3-294 |
Cow position: | chr16:5726865-5726577 (view UCSC Genome Browser custom track) |
Alignm length: | 300 |
Alignm identity: | 225 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 120 |
Conread position: | 4-140 |
Cow position: | chr16:52182213-52182069 (view UCSC Genome Browser custom track) |
Alignm length: | 145 |
Alignm identity: | 112 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 55, 0 |
Conread position: | 5-170 |
Cow position: | chr16:23810853-23810687 (view UCSC Genome Browser custom track) |
Alignm length: | 168 |
Alignm identity: | 121 |
Alignm E-value: | 3e-23 |
Alignm gaps (pig, cow): | 83, 104 |
Conread position: | 5-196 |
Cow position: | chr16:13752184-13752378 (view UCSC Genome Browser custom track) |
Alignm length: | 203 |
Alignm identity: | 149 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 26, 32 |
Conread position: | 5-208 |
Cow position: | chr16:5741184-5740988 (view UCSC Genome Browser custom track) |
Alignm length: | 207 |
Alignm identity: | 153 |
Alignm E-value: | 6e-29 |
Alignm gaps (pig, cow): | 99, 109 |
Conread position: | 5-208 |
Cow position: | chr16:53891841-53892047 (view UCSC Genome Browser custom track) |
Alignm length: | 214 |
Alignm identity: | 154 |
Alignm E-value: | 3e-24 |
Alignm gaps (pig, cow): | 98, 161 |
Conread position: | 5-245 |
Cow position: | chr16:35343529-35343778 (view UCSC Genome Browser custom track) |
Alignm length: | 258 |
Alignm identity: | 191 |
Alignm E-value: | 1e-34 |
Alignm gaps (pig, cow): | 55, 154 |
Conread position: | 5-247 |
Cow position: | chr16:14361047-14360801 (view UCSC Genome Browser custom track) |
Alignm length: | 256 |
Alignm identity: | 187 |
Alignm E-value: | 3e-34 |
Alignm gaps (pig, cow): | 55, 167 |
Conread position: | 5-258 |
Cow position: | chr16:37062455-37062709 (view UCSC Genome Browser custom track) |
Alignm length: | 265 |
Alignm identity: | 181 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 26, 32 |
Conread position: | 5-289 |
Cow position: | chr16:46552747-46552459 (view UCSC Genome Browser custom track) |
Alignm length: | 294 |
Alignm identity: | 208 |
Alignm E-value: | 5e-38 |
Alignm gaps (pig, cow): | 78, 53 |
Conread position: | 5-291 |
Cow position: | chr16:7082793-7083083 (view UCSC Genome Browser custom track) |
Alignm length: | 297 |
Alignm identity: | 221 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 164 |
Conread position: | 5-291 |
Cow position: | chr16:12633827-12633560 (view UCSC Genome Browser custom track) |
Alignm length: | 291 |
Alignm identity: | 210 |
Alignm E-value: | 1e-35 |
Alignm gaps (pig, cow): | 58, 146 |
Conread position: | 5-334 |
Cow position: | chr16:4145005-4144666 (view UCSC Genome Browser custom track) |
Alignm length: | 349 |
Alignm identity: | 247 |
Alignm E-value: | 1.99993e-41 |
Alignm gaps (pig, cow): | 51, 165 |
Conread position: | 8-285 |
Cow position: | chr16:21450784-21450510 (view UCSC Genome Browser custom track) |
Alignm length: | 288 |
Alignm identity: | 213 |
Alignm E-value: | 3.00018e-42 |
Alignm gaps (pig, cow): | 52, 132 |
Conread position: | 8-291 |
Cow position: | chr16:41752635-41752931 (view UCSC Genome Browser custom track) |
Alignm length: | 304 |
Alignm identity: | 225 |
Alignm E-value: | 2.99878e-43 |
Alignm gaps (pig, cow): | 81, 162 |
Conread position: | 12-291 |
Cow position: | chr16:43804431-43804149 (view UCSC Genome Browser custom track) |
Alignm length: | 291 |
Alignm identity: | 222 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 158 |
Conread position: | 16-287 |
Cow position: | chr16:11568187-11568455 (view UCSC Genome Browser custom track) |
Alignm length: | 279 |
Alignm identity: | 201 |
Alignm E-value: | 1e-36 |
Alignm gaps (pig, cow): | 47, 149 |
Conread position: | 16-291 |
Cow position: | chr16:23823085-23823361 (view UCSC Genome Browser custom track) |
Alignm length: | 291 |
Alignm identity: | 210 |
Alignm E-value: | 4e-36 |
Alignm gaps (pig, cow): | 49, 155 |
Conread position: | 17-285 |
Cow position: | chr16:9497347-9497617 (view UCSC Genome Browser custom track) |
Alignm length: | 277 |
Alignm identity: | 203 |
Alignm E-value: | 2.99878e-43 |
Alignm gaps (pig, cow): | 48, 147 |
Conread position: | 17-291 |
Cow position: | chr16:52789986-52789716 (view UCSC Genome Browser custom track) |
Alignm length: | 283 |
Alignm identity: | 220 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 87, 66 |
Show alignments to all cow chromosomes.