Cow genome map

Conread name: rlin01_c13r1.y1

Conread position: 1-149
Cow position: chr16:10592379-10592226 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 125
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 29, 36

Conread position: 1-208
Cow position: chr16:11422255-11422034 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 158
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 30, 36

Conread position: 1-220
Cow position: chr16:35937282-35937057 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 171
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 77, 169

Conread position: 1-287
Cow position: chr16:33226594-33226877 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 36

Conread position: 1-287
Cow position: chr16:38708886-38709165 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 154

Conread position: 1-291
Cow position: chr16:16177760-16177470 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 36

Conread position: 1-291
Cow position: chr16:35188199-35187904 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 166

Conread position: 1-291
Cow position: chr16:39474201-39474488 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 225
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 94, 37

Conread position: 1-291
Cow position: chr16:45139616-45139318 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 36

Conread position: 1-291
Cow position: chr16:49141620-49141908 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 162

Conread position: 1-294
Cow position: chr16:16424659-16424957 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 35

Conread position: 1-294
Cow position: chr16:42078896-42079191 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 36

Conread position: 1-315
Cow position: chr16:33645957-33645645 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 10

Conread position: 1-315
Cow position: chr16:43275966-43275646 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 168

Conread position: 2-294
Cow position: chr16:4059298-4059014 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 218
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 79, 163

Conread position: 2-309
Cow position: chr16:7505031-7504732 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 0

Conread position: 3-102
Cow position: chr16:31348825-31348924 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 83
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 3-126
Cow position: chr16:41689639-41689516 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 42, 85

Conread position: 3-134
Cow position: chr16:14685447-14685588 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 98, 0

Conread position: 3-152
Cow position: chr16:43800976-43801126 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 64, 109

Conread position: 3-160
Cow position: chr16:45047687-45047849 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 125
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 101, 0

Conread position: 3-160
Cow position: chr16:45535123-45534958 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 130
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 28, 34

Conread position: 3-173
Cow position: chr16:10148223-10148045 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 135
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 62, 166

Conread position: 3-173
Cow position: chr16:13233006-13233183 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 127
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 86, 0

Conread position: 3-192
Cow position: chr16:42633808-42633999 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 144
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 24, 33

Conread position: 3-193
Cow position: chr16:37452673-37452868 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 144
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 51, 128

Conread position: 3-197
Cow position: chr16:8933481-8933675 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 154
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 23, 33

Conread position: 3-206
Cow position: chr16:18402627-18402431 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 158
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 100, 85

Conread position: 3-221
Cow position: chr16:29380199-29379974 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 173
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 57, 169

Conread position: 3-224
Cow position: chr16:3614688-3614465 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 164
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 86, 57

Conread position: 3-225
Cow position: chr16:3246264-3246476 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 170
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 56, 8

Conread position: 3-226
Cow position: chr16:33752139-33751911 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 170
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 62, 165

Conread position: 3-229
Cow position: chr16:13578919-13579131 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 164
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 52, 0

Conread position: 3-258
Cow position: chr16:13611511-13611770 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 187
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 93, 68

Conread position: 3-287
Cow position: chr16:32132468-32132188 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 163

Conread position: 3-287
Cow position: chr16:52855081-52855366 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 215
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 62, 159

Conread position: 3-288
Cow position: chr16:31159629-31159917 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 227
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 55, 179

Conread position: 3-289
Cow position: chr16:7499003-7498721 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 159

Conread position: 3-290
Cow position: chr16:20025389-20025074 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 224
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 97, 0

Conread position: 3-291
Cow position: chr16:5415815-5416102 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 216
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 40, 114

Conread position: 3-291
Cow position: chr16:18205903-18205611 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 153

Conread position: 3-291
Cow position: chr16:23738122-23737835 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 213
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 56, 160

Conread position: 3-291
Cow position: chr16:30027796-30027518 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 213
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 56, 78

Conread position: 3-291
Cow position: chr16:30209698-30209430 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 211
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 56, 116

Conread position: 3-291
Cow position: chr16:44676815-44676541 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 90

Conread position: 3-291
Cow position: chr16:53224871-53225153 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 158

Conread position: 3-293
Cow position: chr16:4910584-4910880 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 225
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 57, 171

Conread position: 3-293
Cow position: chr16:9790688-9790977 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 214
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 56, 164

Conread position: 3-294
Cow position: chr16:5726865-5726577 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 120

Conread position: 4-140
Cow position: chr16:52182213-52182069 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 55, 0

Conread position: 5-170
Cow position: chr16:23810853-23810687 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 121
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 83, 104

Conread position: 5-196
Cow position: chr16:13752184-13752378 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 149
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 26, 32

Conread position: 5-208
Cow position: chr16:5741184-5740988 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 153
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 99, 109

Conread position: 5-208
Cow position: chr16:53891841-53892047 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 154
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 98, 161

Conread position: 5-245
Cow position: chr16:35343529-35343778 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 191
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 55, 154

Conread position: 5-247
Cow position: chr16:14361047-14360801 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 187
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 55, 167

Conread position: 5-258
Cow position: chr16:37062455-37062709 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 181
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 26, 32

Conread position: 5-289
Cow position: chr16:46552747-46552459 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 208
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 78, 53

Conread position: 5-291
Cow position: chr16:7082793-7083083 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 164

Conread position: 5-291
Cow position: chr16:12633827-12633560 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 210
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 58, 146

Conread position: 5-334
Cow position: chr16:4145005-4144666 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 247
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 51, 165

Conread position: 8-285
Cow position: chr16:21450784-21450510 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 213
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 52, 132

Conread position: 8-291
Cow position: chr16:41752635-41752931 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 225
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 81, 162

Conread position: 12-291
Cow position: chr16:43804431-43804149 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 158

Conread position: 16-287
Cow position: chr16:11568187-11568455 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 201
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 47, 149

Conread position: 16-291
Cow position: chr16:23823085-23823361 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 210
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 49, 155

Conread position: 17-285
Cow position: chr16:9497347-9497617 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 203
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 48, 147

Conread position: 17-291
Cow position: chr16:52789986-52789716 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 66

Show alignments to all cow chromosomes.