Cow genome map
| Conread name: | rlin01_c13r1.y1 |
| Conread position: | 1-105 |
| Cow position: | chr17:10510673-10510777 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 84 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-167 |
| Cow position: | chr17:38647043-38646873 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 92, 18 |
| Conread position: | 1-179 |
| Cow position: | chr17:908728-908544 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 1-182 |
| Cow position: | chr17:4436247-4436438 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 103, 75 |
| Conread position: | 1-208 |
| Cow position: | chr17:24587607-24587392 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 1-229 |
| Cow position: | chr17:18495535-18495754 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 87, 132 |
| Conread position: | 1-233 |
| Cow position: | chr17:21003843-21004082 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 191 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 30, 38 |
| Conread position: | 1-266 |
| Cow position: | chr17:18109100-18109370 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 202 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 58, 164 |
| Conread position: | 1-286 |
| Cow position: | chr17:25901182-25900895 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 219 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 102, 167 |
| Conread position: | 1-291 |
| Cow position: | chr17:1061074-1061367 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 138 |
| Conread position: | 1-291 |
| Cow position: | chr17:13922464-13922169 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 172 |
| Conread position: | 1-291 |
| Cow position: | chr17:36330973-36331271 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 226 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 37, 153 |
| Conread position: | 1-307 |
| Cow position: | chr17:28285046-28285342 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 92, 15 |
| Conread position: | 2-291 |
| Cow position: | chr17:3498679-3498973 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 219 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 61, 168 |
| Conread position: | 3-140 |
| Cow position: | chr17:979172-979317 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 3-153 |
| Cow position: | chr17:38363003-38363148 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 3-189 |
| Cow position: | chr17:1035614-1035811 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 54, 165 |
| Conread position: | 3-192 |
| Cow position: | chr17:27765253-27765071 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 28, 34 |
| Conread position: | 3-199 |
| Cow position: | chr17:3182601-3182801 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 98, 167 |
| Conread position: | 3-206 |
| Cow position: | chr17:17410274-17410074 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 60, 119 |
| Conread position: | 3-208 |
| Cow position: | chr17:9778231-9778025 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 56, 163 |
| Conread position: | 3-208 |
| Cow position: | chr17:36275321-36275131 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 107, 52 |
| Conread position: | 3-275 |
| Cow position: | chr17:13244057-13244313 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 203 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 86, 137 |
| Conread position: | 3-282 |
| Cow position: | chr17:5224384-5224103 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 164 |
| Conread position: | 3-285 |
| Cow position: | chr17:18860739-18861021 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 163 |
| Conread position: | 3-286 |
| Cow position: | chr17:1295586-1295875 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 164 |
| Conread position: | 3-287 |
| Cow position: | chr17:21959703-21959983 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 146 |
| Conread position: | 3-287 |
| Cow position: | chr17:28540013-28539738 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 213 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 56, 125 |
| Conread position: | 3-289 |
| Cow position: | chr17:20993056-20993347 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 166 |
| Conread position: | 3-291 |
| Cow position: | chr17:4606942-4606663 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 213 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 85, 54 |
| Conread position: | 3-291 |
| Cow position: | chr17:9117630-9117339 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 170 |
| Conread position: | 3-291 |
| Cow position: | chr17:11101817-11102092 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 215 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 83, 160 |
| Conread position: | 3-291 |
| Cow position: | chr17:24883584-24883872 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 228 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 28, 34 |
| Conread position: | 3-291 |
| Cow position: | chr17:27306142-27305854 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 223 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 62, 167 |
| Conread position: | 3-291 |
| Cow position: | chr17:30539269-30539558 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 74 |
| Conread position: | 3-291 |
| Cow position: | chr17:30665255-30664970 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 166 |
| Conread position: | 3-291 |
| Cow position: | chr17:32651603-32651307 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 62, 170 |
| Conread position: | 3-291 |
| Cow position: | chr17:38614942-38614651 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 57, 169 |
| Conread position: | 3-294 |
| Cow position: | chr17:8690458-8690763 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 223 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 56, 137 |
| Conread position: | 3-324 |
| Cow position: | chr17:33271699-33272016 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 56, 89 |
| Conread position: | 4-199 |
| Cow position: | chr17:33052842-33052646 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 55, 161 |
| Conread position: | 4-208 |
| Cow position: | chr17:9746497-9746295 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 79, 162 |
| Conread position: | 5-170 |
| Cow position: | chr17:43634089-43633929 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 156, 74 |
| Conread position: | 5-225 |
| Cow position: | chr17:20839579-20839800 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 59, 154 |
| Conread position: | 5-291 |
| Cow position: | chr17:20848505-20848227 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 219 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 7, 73 |
| Conread position: | 5-291 |
| Cow position: | chr17:32027474-32027771 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 218 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 55, 176 |
| Conread position: | 6-291 |
| Cow position: | chr17:14003798-14003520 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 206 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 96, 82 |
| Conread position: | 12-243 |
| Cow position: | chr17:21114976-21115206 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 84, 155 |
| Conread position: | 18-286 |
| Cow position: | chr17:5767883-5767596 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 13, 19 |
Show alignments to all cow chromosomes.