Cow genome map
| Conread name: | rlin01_c13r1.y1 |
| Conread position: | 1-137 |
| Cow position: | chr18:15340534-15340674 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 1-145 |
| Cow position: | chr18:17391071-17391216 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 97, 33 |
| Conread position: | 1-169 |
| Cow position: | chr18:11691496-11691680 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 1-206 |
| Cow position: | chr18:5766324-5766132 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 1-208 |
| Cow position: | chr18:39875347-39875559 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 92, 139 |
| Conread position: | 1-227 |
| Cow position: | chr18:3132844-3133060 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 30, 14 |
| Conread position: | 1-231 |
| Cow position: | chr18:44549003-44549226 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 99, 157 |
| Conread position: | 1-248 |
| Cow position: | chr18:8105033-8105282 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 148 |
| Conread position: | 1-249 |
| Cow position: | chr18:9365828-9365575 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 169 |
| Conread position: | 1-291 |
| Cow position: | chr18:9974412-9974706 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 36 |
| Conread position: | 1-291 |
| Cow position: | chr18:29356715-29357019 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 229 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 100, 171 |
| Conread position: | 1-291 |
| Cow position: | chr18:33407527-33407240 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 229 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 82, 172 |
| Conread position: | 2-223 |
| Cow position: | chr18:12113466-12113681 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 29, 35 |
| Conread position: | 2-278 |
| Cow position: | chr18:29058583-29058861 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 166 |
| Conread position: | 3-153 |
| Cow position: | chr18:21205272-21205116 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 23, 34 |
| Conread position: | 3-161 |
| Cow position: | chr18:35582191-35582360 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 3-198 |
| Cow position: | chr18:1586892-1587080 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 52, 58 |
| Conread position: | 3-202 |
| Cow position: | chr18:47930955-47931153 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 99, 161 |
| Conread position: | 3-205 |
| Cow position: | chr18:18919047-18919249 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 62, 41 |
| Conread position: | 3-206 |
| Cow position: | chr18:11166890-11166682 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 62, 164 |
| Conread position: | 3-208 |
| Cow position: | chr18:30341264-30341462 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 56, 75 |
| Conread position: | 3-264 |
| Cow position: | chr18:56159371-56159104 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 56, 150 |
| Conread position: | 3-285 |
| Cow position: | chr18:20174219-20174506 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 212 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 55, 167 |
| Conread position: | 3-286 |
| Cow position: | chr18:7956053-7955771 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 99, 52 |
| Conread position: | 3-287 |
| Cow position: | chr18:29796515-29796811 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 86, 188 |
| Conread position: | 3-288 |
| Cow position: | chr18:56168009-56168295 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 80, 144 |
| Conread position: | 3-291 |
| Cow position: | chr18:10861521-10861797 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 55, 92 |
| Conread position: | 3-291 |
| Cow position: | chr18:19193456-19193727 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 3-291 |
| Cow position: | chr18:19849846-19850127 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 162 |
| Conread position: | 3-291 |
| Cow position: | chr18:31672600-31672883 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 219 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 56, 162 |
| Conread position: | 3-291 |
| Cow position: | chr18:36458843-36458552 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 34 |
| Conread position: | 3-291 |
| Cow position: | chr18:47314379-47314680 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 23, 33 |
| Conread position: | 3-294 |
| Cow position: | chr18:5647158-5646857 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 57, 226 |
| Conread position: | 3-335 |
| Cow position: | chr18:1584317-1584636 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 290, 67 |
| Conread position: | 5-184 |
| Cow position: | chr18:5711759-5711943 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 54, 164 |
| Conread position: | 5-206 |
| Cow position: | chr18:3115371-3115163 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 58, 168 |
| Conread position: | 5-286 |
| Cow position: | chr18:16044244-16044526 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 107, 224 |
| Conread position: | 5-291 |
| Cow position: | chr18:9010629-9010350 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 56 |
| Conread position: | 5-291 |
| Cow position: | chr18:11867248-11866974 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 213 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 81, 157 |
| Conread position: | 5-291 |
| Cow position: | chr18:23447173-23447460 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 54, 165 |
| Conread position: | 5-291 |
| Cow position: | chr18:35636440-35636729 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 218 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 55, 165 |
| Conread position: | 12-291 |
| Cow position: | chr18:13293411-13293127 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 155 |
| Conread position: | 15-194 |
| Cow position: | chr18:30794332-30794145 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 78, 154 |
| Conread position: | 15-291 |
| Cow position: | chr18:5189790-5190061 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 106 |
| Conread position: | 18-287 |
| Cow position: | chr18:51406014-51406269 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 210 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 47, 134 |
Show alignments to all cow chromosomes.