Cow genome map
| Conread name: | rlin01_c13r1.y1 |
| Conread position: | 1-139 |
| Cow position: | chr19:22043418-22043558 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 105, 85 |
| Conread position: | 1-140 |
| Cow position: | chr19:42903941-42903803 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-202 |
| Cow position: | chr19:47671683-47671480 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 26, 36 |
| Conread position: | 1-205 |
| Cow position: | chr19:7668632-7668424 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 101, 57 |
| Conread position: | 1-287 |
| Cow position: | chr19:15068071-15068350 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 10 |
| Conread position: | 1-287 |
| Cow position: | chr19:39057177-39056888 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 167 |
| Conread position: | 1-290 |
| Cow position: | chr19:34620097-34620391 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 36 |
| Conread position: | 1-291 |
| Cow position: | chr19:7612554-7612268 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 156 |
| Conread position: | 1-291 |
| Cow position: | chr19:8375372-8375660 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 164 |
| Conread position: | 1-291 |
| Cow position: | chr19:22765554-22765257 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 172 |
| Conread position: | 2-200 |
| Cow position: | chr19:41584907-41584704 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 29, 35 |
| Conread position: | 3-97 |
| Cow position: | chr19:25807371-25807465 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 79 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-102 |
| Cow position: | chr19:10242517-10242418 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 82 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-105 |
| Cow position: | chr19:24137193-24137091 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 83 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-160 |
| Cow position: | chr19:6531821-6531655 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 98, 58 |
| Conread position: | 3-166 |
| Cow position: | chr19:1898304-1898475 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 52, 164 |
| Conread position: | 3-167 |
| Cow position: | chr19:5913025-5913195 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 52, 86 |
| Conread position: | 3-196 |
| Cow position: | chr19:52381461-52381266 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 99, 138 |
| Conread position: | 3-230 |
| Cow position: | chr19:53037221-53037450 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 60, 167 |
| Conread position: | 3-243 |
| Cow position: | chr19:6417526-6417287 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 106, 159 |
| Conread position: | 3-268 |
| Cow position: | chr19:10171934-10171653 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 209 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 56, 261 |
| Conread position: | 3-281 |
| Cow position: | chr19:6516198-6515910 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 219 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 56, 170 |
| Conread position: | 3-283 |
| Cow position: | chr19:29115673-29115405 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 177, 8 |
| Conread position: | 3-283 |
| Cow position: | chr19:38340048-38340324 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 160 |
| Conread position: | 3-290 |
| Cow position: | chr19:35622290-35622008 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 94, 159 |
| Conread position: | 3-291 |
| Cow position: | chr19:2734382-2734091 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 165 |
| Conread position: | 3-291 |
| Cow position: | chr19:2821513-2821217 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 100, 167 |
| Conread position: | 3-291 |
| Cow position: | chr19:17273798-17274077 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 87 |
| Conread position: | 3-291 |
| Cow position: | chr19:31874044-31873746 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 121 |
| Conread position: | 3-291 |
| Cow position: | chr19:33932217-33932504 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 115 |
| Conread position: | 3-291 |
| Cow position: | chr19:35540228-35539944 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 158 |
| Conread position: | 3-291 |
| Cow position: | chr19:48409442-48409156 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 159 |
| Conread position: | 4-197 |
| Cow position: | chr19:10093224-10093028 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 59, 163 |
| Conread position: | 4-291 |
| Cow position: | chr19:23222566-23222283 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 225 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 27, 33 |
| Conread position: | 5-208 |
| Cow position: | chr19:990490-990689 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 88, 156 |
| Conread position: | 5-285 |
| Cow position: | chr19:54942902-54942622 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 83, 115 |
| Conread position: | 5-291 |
| Cow position: | chr19:29627450-29627727 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 215 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 97, 156 |
| Conread position: | 7-287 |
| Cow position: | chr19:46180887-46181166 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 162 |
| Conread position: | 12-259 |
| Cow position: | chr19:4587798-4588049 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 196 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 77, 154 |
| Conread position: | 15-287 |
| Cow position: | chr19:44838993-44839250 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 93 |
| Conread position: | 15-288 |
| Cow position: | chr19:53542971-53543231 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 16, 22 |
| Conread position: | 15-291 |
| Cow position: | chr19:24358310-24358583 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 149 |
| Conread position: | 18-174 |
| Cow position: | chr19:53953740-53953893 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 42, 71 |
Show alignments to all cow chromosomes.