Cow genome map

Conread name: rlin01_c13r1.y1

Conread position: 1-102
Cow position: chr2:1638547-1638446 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 84
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-138
Cow position: chr2:29907252-29907393 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 114
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 29, 36

Conread position: 1-167
Cow position: chr2:45535409-45535237 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 137
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 97, 48

Conread position: 1-197
Cow position: chr2:68190696-68190891 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 149
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 88, 164

Conread position: 1-198
Cow position: chr2:80797614-80797419 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 156
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 94, 13

Conread position: 1-199
Cow position: chr2:11617042-11616842 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 152
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 58, 132

Conread position: 1-199
Cow position: chr2:63568311-63568115 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 144
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 77, 163

Conread position: 1-200
Cow position: chr2:46994810-46995010 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 164
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 100, 168

Conread position: 1-248
Cow position: chr2:74260401-74260153 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 196
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 102, 166

Conread position: 1-263
Cow position: chr2:46202216-46201951 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 171

Conread position: 1-264
Cow position: chr2:21284879-21284617 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 163

Conread position: 1-280
Cow position: chr2:39068251-39067949 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 221
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 88, 300

Conread position: 1-282
Cow position: chr2:46189153-46189456 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 227
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 30, 36

Conread position: 1-285
Cow position: chr2:56828623-56828911 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 165

Conread position: 1-287
Cow position: chr2:18997670-18997393 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 213
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 30, 36

Conread position: 1-290
Cow position: chr2:46294093-46294382 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 57

Conread position: 1-291
Cow position: chr2:549383-549668 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 115

Conread position: 1-291
Cow position: chr2:38628852-38628567 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 36

Conread position: 1-291
Cow position: chr2:41452179-41451879 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 36

Conread position: 1-291
Cow position: chr2:45912689-45912984 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 182

Conread position: 1-291
Cow position: chr2:47115974-47116254 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 218
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 103, 49

Conread position: 1-291
Cow position: chr2:48069453-48069749 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 168

Conread position: 1-291
Cow position: chr2:80324908-80325196 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 164

Conread position: 2-245
Cow position: chr2:4254590-4254839 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 198
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 29, 35

Conread position: 2-291
Cow position: chr2:31783881-31783595 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 35

Conread position: 3-149
Cow position: chr2:19294535-19294388 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 88, 55

Conread position: 3-162
Cow position: chr2:15597531-15597696 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 130
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 99, 56

Conread position: 3-164
Cow position: chr2:28318910-28319080 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 129
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 62, 0

Conread position: 3-165
Cow position: chr2:46353551-46353713 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 118
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 99, 114

Conread position: 3-167
Cow position: chr2:28257407-28257241 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 130
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 51, 101

Conread position: 3-171
Cow position: chr2:60462877-60463052 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 133
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 98, 0

Conread position: 3-171
Cow position: chr2:60468256-60468431 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 135
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 98, 0

Conread position: 3-172
Cow position: chr2:6697552-6697731 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 134
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 88, 63

Conread position: 3-174
Cow position: chr2:69770446-69770265 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 138
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 97, 0

Conread position: 3-176
Cow position: chr2:80963703-80963885 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 146
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 62, 0

Conread position: 3-196
Cow position: chr2:47990379-47990186 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 143
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 63, 163

Conread position: 3-198
Cow position: chr2:34535213-34535421 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 158
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 55, 74

Conread position: 3-199
Cow position: chr2:14555807-14556008 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 149
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 82, 164

Conread position: 3-206
Cow position: chr2:14349729-14349531 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 159
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 185, 84

Conread position: 3-206
Cow position: chr2:51594707-51594501 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 158
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 84, 165

Conread position: 3-221
Cow position: chr2:42608009-42607792 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 169
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 97, 137

Conread position: 3-228
Cow position: chr2:41185415-41185185 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 177
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 65, 8

Conread position: 3-237
Cow position: chr2:45554258-45554020 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 179
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 101, 166

Conread position: 3-254
Cow position: chr2:33497254-33497516 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 199
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 57, 173

Conread position: 3-270
Cow position: chr2:45439384-45439130 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 195
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 57, 0

Conread position: 3-279
Cow position: chr2:6884167-6883890 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 210
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 62, 152

Conread position: 3-283
Cow position: chr2:1210822-1211109 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 213
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 57, 169

Conread position: 3-285
Cow position: chr2:10867954-10868248 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 205
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 86, 56

Conread position: 3-285
Cow position: chr2:16514728-16514446 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 162

Conread position: 3-286
Cow position: chr2:18858202-18858480 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 45

Conread position: 3-286
Cow position: chr2:19212109-19212387 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 158

Conread position: 3-287
Cow position: chr2:24593814-24593547 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 204
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 28, 34

Conread position: 3-287
Cow position: chr2:38273488-38273195 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 215
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 62, 168

Conread position: 3-289
Cow position: chr2:6038951-6038661 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 219
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 24, 33

Conread position: 3-291
Cow position: chr2:15298481-15298192 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 87

Conread position: 3-291
Cow position: chr2:32408547-32408861 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 228
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 53, 0

Conread position: 3-291
Cow position: chr2:44081378-44081100 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 0

Conread position: 3-291
Cow position: chr2:45259140-45259425 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 14

Conread position: 3-291
Cow position: chr2:45623960-45623677 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 112

Conread position: 3-291
Cow position: chr2:65269747-65270043 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 174

Conread position: 3-291
Cow position: chr2:76110340-76110036 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 223
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 62, 168

Conread position: 3-294
Cow position: chr2:14884227-14883931 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 34

Conread position: 3-294
Cow position: chr2:29269002-29268712 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 84

Conread position: 3-294
Cow position: chr2:32446391-32446676 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 204
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 191, 57

Conread position: 3-294
Cow position: chr2:51824867-51824588 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 216
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 86, 163

Conread position: 5-102
Cow position: chr2:38785663-38785759 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 82
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 73, 0

Conread position: 5-174
Cow position: chr2:62644530-62644362 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 124
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 60, 92

Conread position: 5-204
Cow position: chr2:2689108-2688911 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 155
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 83, 159

Conread position: 5-208
Cow position: chr2:4273328-4273536 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 146
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 81, 160

Conread position: 5-220
Cow position: chr2:485560-485343 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 163
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 60, 165

Conread position: 5-221
Cow position: chr2:53430669-53430452 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 176
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 21, 31

Conread position: 5-234
Cow position: chr2:32489468-32489690 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 166
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 59, 83

Conread position: 5-291
Cow position: chr2:36105208-36104907 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 215

Conread position: 5-291
Cow position: chr2:57776295-57776000 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 175

Conread position: 5-291
Cow position: chr2:76340715-76341015 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 162

Conread position: 6-289
Cow position: chr2:39384931-39385209 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 31

Conread position: 7-228
Cow position: chr2:6952135-6951924 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 171
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 81, 0

Conread position: 7-291
Cow position: chr2:45575055-45575345 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 30

Conread position: 8-291
Cow position: chr2:60956311-60956033 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 206
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 35, 49

Conread position: 8-310
Cow position: chr2:22372008-22372314 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 161

Conread position: 11-283
Cow position: chr2:1300453-1300721 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 193
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 114, 93

Conread position: 12-280
Cow position: chr2:20855893-20856161 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 153

Conread position: 12-282
Cow position: chr2:76969239-76969516 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 161

Conread position: 15-145
Cow position: chr2:58686868-58686734 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 74, 0

Conread position: 15-267
Cow position: chr2:37920851-37921103 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 196
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 65, 46

Conread position: 15-270
Cow position: chr2:1095830-1095578 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 190
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 88, 142

Conread position: 18-287
Cow position: chr2:37009344-37009073 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 148

Conread position: 18-291
Cow position: chr2:28711063-28711326 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 201
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 84, 58

Show alignments to all cow chromosomes.