Cow genome map
| Conread name: | rlin01_c13r1.y1 |
| Conread position: | 1-170 |
| Cow position: | chr20:24000810-24000970 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 58, 94 |
| Conread position: | 1-174 |
| Cow position: | chr20:11043515-11043692 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 1-225 |
| Cow position: | chr20:39517994-39517772 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 102, 131 |
| Conread position: | 1-287 |
| Cow position: | chr20:38817993-38817713 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 160 |
| Conread position: | 1-287 |
| Cow position: | chr20:39398473-39398177 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 225 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 29, 36 |
| Conread position: | 1-291 |
| Cow position: | chr20:14806873-14806578 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 36 |
| Conread position: | 1-291 |
| Cow position: | chr20:19363378-19363668 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 10 |
| Conread position: | 1-291 |
| Cow position: | chr20:28605191-28604908 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 213 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 86, 167 |
| Conread position: | 1-293 |
| Cow position: | chr20:40177233-40176944 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 83, 164 |
| Conread position: | 2-146 |
| Cow position: | chr20:7438867-7439017 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 29, 35 |
| Conread position: | 2-202 |
| Cow position: | chr20:38768470-38768671 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 94, 164 |
| Conread position: | 2-282 |
| Cow position: | chr20:6240535-6240827 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 3-160 |
| Cow position: | chr20:13994799-13994627 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 3-160 |
| Cow position: | chr20:35907066-35907229 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 3-202 |
| Cow position: | chr20:34777165-34776968 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 61, 27 |
| Conread position: | 3-204 |
| Cow position: | chr20:40511773-40511977 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 85, 57 |
| Conread position: | 3-208 |
| Cow position: | chr20:7442142-7442348 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 56 |
| Conread position: | 3-208 |
| Cow position: | chr20:14735661-14735453 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 93, 166 |
| Conread position: | 3-286 |
| Cow position: | chr20:40781953-40781675 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 56, 172 |
| Conread position: | 3-287 |
| Cow position: | chr20:14572374-14572681 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 3-291 |
| Cow position: | chr20:3781441-3781738 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 34 |
| Conread position: | 3-291 |
| Cow position: | chr20:12334360-12334076 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 159 |
| Conread position: | 3-291 |
| Cow position: | chr20:17251701-17251404 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 56, 135 |
| Conread position: | 3-291 |
| Cow position: | chr20:30817520-30817229 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 98, 161 |
| Conread position: | 3-291 |
| Cow position: | chr20:39415730-39415448 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 191 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 52, 198 |
| Conread position: | 3-291 |
| Cow position: | chr20:40303883-40304155 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 34 |
| Conread position: | 3-294 |
| Cow position: | chr20:19328387-19328092 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 224 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 62, 76 |
| Conread position: | 5-186 |
| Cow position: | chr20:6603023-6602835 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 96, 162 |
| Conread position: | 5-291 |
| Cow position: | chr20:12996027-12996316 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 54 |
| Conread position: | 11-267 |
| Cow position: | chr20:42469739-42469484 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 44, 68 |
| Conread position: | 12-202 |
| Cow position: | chr20:39019670-39019478 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 19, 25 |
Show alignments to all cow chromosomes.