Cow genome map
| Conread name: | rlin01_c13r1.y1 |
| Conread position: | 1-145 |
| Cow position: | chr21:18041840-18041989 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 1-176 |
| Cow position: | chr21:27624717-27624535 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 1-201 |
| Cow position: | chr21:21077334-21077133 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 1-206 |
| Cow position: | chr21:29484987-29484783 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 172 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 96, 164 |
| Conread position: | 1-217 |
| Cow position: | chr21:13365348-13365129 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 10, 38 |
| Conread position: | 1-284 |
| Cow position: | chr21:18850220-18850505 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 1-287 |
| Cow position: | chr21:27229786-27230074 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 221 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 1-294 |
| Cow position: | chr21:44515271-44514976 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 30 |
| Conread position: | 1-299 |
| Cow position: | chr21:42024130-42023841 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 225 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 1-328 |
| Cow position: | chr21:23683556-23683225 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 3-164 |
| Cow position: | chr21:26244924-26244765 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 99, 8 |
| Conread position: | 3-206 |
| Cow position: | chr21:37361470-37361675 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 3-208 |
| Cow position: | chr21:1059084-1058874 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 56, 168 |
| Conread position: | 3-208 |
| Cow position: | chr21:34835428-34835626 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 65, 143 |
| Conread position: | 3-209 |
| Cow position: | chr21:3381077-3381285 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 61, 162 |
| Conread position: | 3-236 |
| Cow position: | chr21:41878477-41878245 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 101, 133 |
| Conread position: | 3-282 |
| Cow position: | chr21:36795606-36795323 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 212 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 93, 163 |
| Conread position: | 3-285 |
| Cow position: | chr21:5898393-5898676 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 84, 165 |
| Conread position: | 3-285 |
| Cow position: | chr21:46849121-46849399 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 213 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 56, 27 |
| Conread position: | 3-287 |
| Cow position: | chr21:39401600-39401318 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 34 |
| Conread position: | 3-288 |
| Cow position: | chr21:20160684-20160401 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 95, 41 |
| Conread position: | 3-288 |
| Cow position: | chr21:20925500-20925788 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 167 |
| Conread position: | 3-291 |
| Cow position: | chr21:5454983-5455272 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 28, 41 |
| Conread position: | 3-291 |
| Cow position: | chr21:36756605-36756329 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 85 |
| Conread position: | 3-291 |
| Cow position: | chr21:48484441-48484726 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 113 |
| Conread position: | 3-294 |
| Cow position: | chr21:38867566-38867856 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 54, 129 |
| Conread position: | 3-296 |
| Cow position: | chr21:43357252-43357552 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 155 |
| Conread position: | 5-284 |
| Cow position: | chr21:23801124-23801399 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 82, 153 |
| Conread position: | 5-289 |
| Cow position: | chr21:45151615-45151915 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 60, 168 |
| Conread position: | 5-291 |
| Cow position: | chr21:18494973-18494692 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 99, 168 |
| Conread position: | 5-291 |
| Cow position: | chr21:46912544-46912258 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 216 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 55, 160 |
| Conread position: | 6-287 |
| Cow position: | chr21:10514808-10514530 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 6, 145 |
| Conread position: | 11-285 |
| Cow position: | chr21:36793890-36793602 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 71 |
| Conread position: | 12-291 |
| Cow position: | chr21:25344869-25344592 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 152 |
| Conread position: | 15-158 |
| Cow position: | chr21:41590566-41590716 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 16, 22 |
| Conread position: | 15-167 |
| Cow position: | chr21:13163885-13163723 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 50, 154 |
| Conread position: | 15-287 |
| Cow position: | chr21:33263843-33263569 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 22 |
| Conread position: | 15-291 |
| Cow position: | chr21:395864-395592 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 22 |
| Conread position: | 18-268 |
| Cow position: | chr21:18935752-18935503 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 89, 209 |
| Conread position: | 18-291 |
| Cow position: | chr21:33997236-33997511 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 205 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 86, 52 |
Show alignments to all cow chromosomes.