Cow genome map
| Conread name: | rlin01_c13r1.y1 |
| Conread position: | 1-160 |
| Cow position: | chr22:40048494-40048335 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 60, 43 |
| Conread position: | 1-206 |
| Cow position: | chr22:19848454-19848663 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 88, 147 |
| Conread position: | 1-208 |
| Cow position: | chr22:2216762-2216552 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 30, 10 |
| Conread position: | 1-291 |
| Cow position: | chr22:9734795-9734506 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 167 |
| Conread position: | 1-293 |
| Cow position: | chr22:864576-864875 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 166 |
| Conread position: | 2-167 |
| Cow position: | chr22:21526652-21526829 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 2-291 |
| Cow position: | chr22:27171315-27171609 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 225 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 86, 170 |
| Conread position: | 2-294 |
| Cow position: | chr22:4017417-4017120 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 35 |
| Conread position: | 3-158 |
| Cow position: | chr22:25237208-25237367 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 3-161 |
| Cow position: | chr22:20862819-20862978 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 56, 88 |
| Conread position: | 3-200 |
| Cow position: | chr22:36761567-36761371 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 51, 164 |
| Conread position: | 3-202 |
| Cow position: | chr22:38980836-38980643 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 99, 56 |
| Conread position: | 3-206 |
| Cow position: | chr22:4651120-4650913 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 28, 53 |
| Conread position: | 3-206 |
| Cow position: | chr22:26339693-26339491 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 169 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 101, 8 |
| Conread position: | 3-208 |
| Cow position: | chr22:2623580-2623784 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 28, 34 |
| Conread position: | 3-208 |
| Cow position: | chr22:23854913-23854710 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 52, 58 |
| Conread position: | 3-223 |
| Cow position: | chr22:1975551-1975331 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 90, 166 |
| Conread position: | 3-231 |
| Cow position: | chr22:37201793-37201566 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 52, 140 |
| Conread position: | 3-257 |
| Cow position: | chr22:16251626-16251884 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 107, 85 |
| Conread position: | 3-276 |
| Cow position: | chr22:14143173-14143442 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 60, 91 |
| Conread position: | 3-283 |
| Cow position: | chr22:23856987-23856704 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 10 |
| Conread position: | 3-285 |
| Cow position: | chr22:3842557-3842280 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 207 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 53, 76 |
| Conread position: | 3-285 |
| Cow position: | chr22:7838532-7838258 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 3-287 |
| Cow position: | chr22:11200975-11200697 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 100, 144 |
| Conread position: | 3-287 |
| Cow position: | chr22:27322257-27321974 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 175 |
| Conread position: | 3-288 |
| Cow position: | chr22:30515191-30514905 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 163 |
| Conread position: | 3-289 |
| Cow position: | chr22:40374547-40374255 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 168 |
| Conread position: | 3-291 |
| Cow position: | chr22:11130807-11130523 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 100, 55 |
| Conread position: | 3-291 |
| Cow position: | chr22:11987275-11987567 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 169 |
| Conread position: | 3-291 |
| Cow position: | chr22:34476063-34476352 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 165 |
| Conread position: | 3-291 |
| Cow position: | chr22:41044972-41045267 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 166 |
| Conread position: | 3-294 |
| Cow position: | chr22:1309789-1310083 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 161 |
| Conread position: | 3-294 |
| Cow position: | chr22:27635413-27635132 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 202 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 111, 11 |
| Conread position: | 3-320 |
| Cow position: | chr22:16621115-16620793 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 62, 169 |
| Conread position: | 4-265 |
| Cow position: | chr22:27328950-27329212 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 55, 161 |
| Conread position: | 4-291 |
| Cow position: | chr22:30954974-30954686 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 159 |
| Conread position: | 5-174 |
| Cow position: | chr22:5384588-5384414 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 96, 160 |
| Conread position: | 5-174 |
| Cow position: | chr22:12968132-12968310 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 54, 165 |
| Conread position: | 5-208 |
| Cow position: | chr22:34750614-34750407 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 84, 7 |
| Conread position: | 5-275 |
| Cow position: | chr22:24734375-24734648 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 80, 165 |
| Conread position: | 5-281 |
| Cow position: | chr22:34665986-34665710 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 213 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 60, 162 |
| Conread position: | 5-287 |
| Cow position: | chr22:32952413-32952118 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 5-291 |
| Cow position: | chr22:38940011-38940301 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 165 |
| Conread position: | 7-286 |
| Cow position: | chr22:912033-911757 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 158 |
| Conread position: | 7-290 |
| Cow position: | chr22:17814161-17813885 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 214 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 52, 152 |
| Conread position: | 7-291 |
| Cow position: | chr22:15068362-15068059 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 52, 287 |
| Conread position: | 8-206 |
| Cow position: | chr22:35533426-35533623 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 56, 123 |
| Conread position: | 11-208 |
| Cow position: | chr22:25341952-25341750 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 54, 159 |
| Conread position: | 15-254 |
| Cow position: | chr22:852955-852713 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 48, 29 |
| Conread position: | 15-262 |
| Cow position: | chr22:226525-226760 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 107, 82 |
| Conread position: | 15-287 |
| Cow position: | chr22:1791917-1791643 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 73, 153 |
| Conread position: | 15-291 |
| Cow position: | chr22:11489460-11489188 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 209 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 16, 22 |
| Conread position: | 15-291 |
| Cow position: | chr22:32661436-32661164 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 43, 77 |
| Conread position: | 16-288 |
| Cow position: | chr22:4043858-4043587 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 212 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 75, 104 |
| Conread position: | 16-291 |
| Cow position: | chr22:31646419-31646141 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 21 |
| Conread position: | 17-291 |
| Cow position: | chr22:11837282-11837554 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 146 |
| Conread position: | 18-291 |
| Cow position: | chr22:17152605-17152327 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 201 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 83, 259 |
Show alignments to all cow chromosomes.