Cow genome map
| Conread name: | rlin01_c13r1.y1 |
| Conread position: | 1-190 |
| Cow position: | chr27:19685699-19685509 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 92, 162 |
| Conread position: | 1-198 |
| Cow position: | chr27:16871901-16871706 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 1-198 |
| Cow position: | chr27:28164394-28164198 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 103, 137 |
| Conread position: | 1-206 |
| Cow position: | chr27:7935146-7934942 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 62, 163 |
| Conread position: | 1-209 |
| Cow position: | chr27:27259620-27259832 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 1-225 |
| Cow position: | chr27:24738779-24738556 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 37, 29 |
| Conread position: | 1-254 |
| Cow position: | chr27:30407025-30406762 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 85, 174 |
| Conread position: | 1-281 |
| Cow position: | chr27:19717936-19718212 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 217 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 88, 10 |
| Conread position: | 1-287 |
| Cow position: | chr27:8629861-8629572 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 1-291 |
| Cow position: | chr27:815378-815671 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 167 |
| Conread position: | 1-291 |
| Cow position: | chr27:19388026-19388323 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 222 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 103, 173 |
| Conread position: | 1-291 |
| Cow position: | chr27:25790815-25791118 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 58, 165 |
| Conread position: | 1-291 |
| Cow position: | chr27:31219264-31219541 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 1-294 |
| Cow position: | chr27:26959606-26959315 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 1-335 |
| Cow position: | chr27:15859075-15858743 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 18 |
| Conread position: | 3-160 |
| Cow position: | chr27:27550728-27550566 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 84, 53 |
| Conread position: | 3-174 |
| Cow position: | chr27:28001796-28001624 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 56, 138 |
| Conread position: | 3-179 |
| Cow position: | chr27:20591995-20592183 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 61, 169 |
| Conread position: | 3-198 |
| Cow position: | chr27:22454764-22454565 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 82, 164 |
| Conread position: | 3-202 |
| Cow position: | chr27:706965-707164 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 100, 163 |
| Conread position: | 3-202 |
| Cow position: | chr27:22498571-22498770 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 86, 147 |
| Conread position: | 3-206 |
| Cow position: | chr27:2592562-2592762 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 57, 86 |
| Conread position: | 3-208 |
| Cow position: | chr27:11416462-11416666 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 35, 59 |
| Conread position: | 3-222 |
| Cow position: | chr27:6500072-6500302 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 57, 173 |
| Conread position: | 3-287 |
| Cow position: | chr27:15867410-15867689 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 213 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 56, 122 |
| Conread position: | 3-291 |
| Cow position: | chr27:13875745-13876033 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 223 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 99, 167 |
| Conread position: | 4-284 |
| Cow position: | chr27:25380008-25380296 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 215 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 90, 163 |
| Conread position: | 5-173 |
| Cow position: | chr27:22547392-22547211 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 26, 32 |
| Conread position: | 5-270 |
| Cow position: | chr27:29399831-29400102 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 60, 168 |
| Conread position: | 6-188 |
| Cow position: | chr27:20354600-20354783 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 6, 160 |
| Conread position: | 8-291 |
| Cow position: | chr27:22179775-22179481 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 223 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 57, 41 |
| Conread position: | 10-287 |
| Cow position: | chr27:27038819-27038538 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 214 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 54, 153 |
| Conread position: | 13-291 |
| Cow position: | chr27:15271935-15272212 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 207 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 88, 151 |
| Conread position: | 16-187 |
| Cow position: | chr27:28061737-28061560 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 15, 21 |
| Conread position: | 16-287 |
| Cow position: | chr27:14670357-14670079 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 162 |
| Conread position: | 18-198 |
| Cow position: | chr27:26239054-26239237 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 70, 134 |
Show alignments to all cow chromosomes.