Cow genome map
| Conread name: | rlin01_c13r1.y1 |
| Conread position: | 1-102 |
| Cow position: | chr28:13290183-13290283 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 85 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 1-198 |
| Cow position: | chr28:22345968-22345768 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 30, 12 |
| Conread position: | 1-200 |
| Cow position: | chr28:25596576-25596379 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 103, 30 |
| Conread position: | 1-207 |
| Cow position: | chr28:3492835-3493044 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 102, 168 |
| Conread position: | 1-224 |
| Cow position: | chr28:27428693-27428473 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 100, 66 |
| Conread position: | 1-283 |
| Cow position: | chr28:10762609-10762338 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 202 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 1-285 |
| Cow position: | chr28:3914661-3914372 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 175 |
| Conread position: | 1-285 |
| Cow position: | chr28:7549110-7549400 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 66 |
| Conread position: | 1-291 |
| Cow position: | chr28:8787489-8787206 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 155 |
| Conread position: | 1-291 |
| Cow position: | chr28:30327141-30327428 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 159 |
| Conread position: | 2-160 |
| Cow position: | chr28:5188455-5188621 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 3-102 |
| Cow position: | chr28:30746780-30746879 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 82 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-186 |
| Cow position: | chr28:12951377-12951185 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 3-204 |
| Cow position: | chr28:23410377-23410581 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 55, 80 |
| Conread position: | 3-206 |
| Cow position: | chr28:16252912-16253114 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 57, 164 |
| Conread position: | 3-206 |
| Cow position: | chr28:24996641-24996848 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 91, 50 |
| Conread position: | 3-243 |
| Cow position: | chr28:15043914-15044152 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 28, 34 |
| Conread position: | 3-267 |
| Cow position: | chr28:4307956-4308218 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 90 |
| Conread position: | 3-285 |
| Cow position: | chr28:25806520-25806259 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 214 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 56, 110 |
| Conread position: | 3-288 |
| Cow position: | chr28:20313222-20312933 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 10 |
| Conread position: | 3-290 |
| Cow position: | chr28:26922419-26922713 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 57, 66 |
| Conread position: | 3-291 |
| Cow position: | chr28:4022333-4022038 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 169 |
| Conread position: | 3-291 |
| Cow position: | chr28:10745160-10744861 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 57, 169 |
| Conread position: | 3-291 |
| Cow position: | chr28:17738126-17738422 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 220 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 56, 171 |
| Conread position: | 3-291 |
| Cow position: | chr28:18790962-18790668 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 167 |
| Conread position: | 3-291 |
| Cow position: | chr28:21103888-21104188 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 56, 170 |
| Conread position: | 3-291 |
| Cow position: | chr28:21363693-21363414 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 57 |
| Conread position: | 3-291 |
| Cow position: | chr28:22332482-22332206 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 3-294 |
| Cow position: | chr28:12430555-12430260 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 164 |
| Conread position: | 4-197 |
| Cow position: | chr28:8408680-8408486 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 99, 8 |
| Conread position: | 5-290 |
| Cow position: | chr28:18354378-18354649 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 54, 20 |
| Conread position: | 5-291 |
| Cow position: | chr28:30303248-30303531 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 220 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 47, 20 |
| Conread position: | 6-291 |
| Cow position: | chr28:5817788-5817508 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 214 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 53, 149 |
| Conread position: | 7-208 |
| Cow position: | chr28:16243815-16244020 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 53, 32 |
| Conread position: | 11-291 |
| Cow position: | chr28:7865264-7864987 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 90, 119 |
| Conread position: | 15-287 |
| Cow position: | chr28:11786776-11787046 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 150 |
| Conread position: | 16-236 |
| Cow position: | chr28:29455722-29455941 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 86, 150 |
| Conread position: | 18-301 |
| Cow position: | chr28:16441316-16441036 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 121 |
Show alignments to all cow chromosomes.