Cow genome map
| Conread name: | rlin01_c13r1.y1 |
| Conread position: | 1-101 |
| Cow position: | chr3:76922742-76922842 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 83 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-106 |
| Cow position: | chr3:70762202-70762307 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 29, 36 |
| Conread position: | 1-162 |
| Cow position: | chr3:44932433-44932258 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 1-173 |
| Cow position: | chr3:54946049-54945863 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 1-200 |
| Cow position: | chr3:59208735-59208532 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 100, 168 |
| Conread position: | 1-205 |
| Cow position: | chr3:23408431-23408629 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 102, 84 |
| Conread position: | 1-208 |
| Cow position: | chr3:68708083-68708291 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 1-208 |
| Cow position: | chr3:68881191-68881399 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 1-235 |
| Cow position: | chr3:74601032-74600803 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 85, 160 |
| Conread position: | 1-287 |
| Cow position: | chr3:80581585-80581308 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 155 |
| Conread position: | 1-291 |
| Cow position: | chr3:2630715-2630422 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 213 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 26, 36 |
| Conread position: | 1-291 |
| Cow position: | chr3:16004069-16004357 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 174 |
| Conread position: | 1-291 |
| Cow position: | chr3:21341041-21341336 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 1-291 |
| Cow position: | chr3:26894582-26894298 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 38 |
| Conread position: | 1-291 |
| Cow position: | chr3:29887503-29887797 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 10 |
| Conread position: | 1-294 |
| Cow position: | chr3:53221934-53221652 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 30, 8 |
| Conread position: | 2-287 |
| Cow position: | chr3:70565818-70566107 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 164 |
| Conread position: | 3-145 |
| Cow position: | chr3:67930264-67930411 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 99, 58 |
| Conread position: | 3-151 |
| Cow position: | chr3:8061046-8060893 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 3-151 |
| Cow position: | chr3:22232733-22232882 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 28, 34 |
| Conread position: | 3-157 |
| Cow position: | chr3:30055528-30055691 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 59, 10 |
| Conread position: | 3-167 |
| Cow position: | chr3:52650612-52650787 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 101, 168 |
| Conread position: | 3-176 |
| Cow position: | chr3:22820487-22820306 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 104, 165 |
| Conread position: | 3-208 |
| Cow position: | chr3:56458-56659 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 86, 52 |
| Conread position: | 3-208 |
| Cow position: | chr3:5097125-5096913 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 173 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 56, 168 |
| Conread position: | 3-222 |
| Cow position: | chr3:56704625-56704841 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 172 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 99, 156 |
| Conread position: | 3-257 |
| Cow position: | chr3:15052033-15052281 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 101, 164 |
| Conread position: | 3-266 |
| Cow position: | chr3:31903195-31903456 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 28, 51 |
| Conread position: | 3-283 |
| Cow position: | chr3:48296628-48296346 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 95, 166 |
| Conread position: | 3-283 |
| Cow position: | chr3:50614556-50614280 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 84, 161 |
| Conread position: | 3-286 |
| Cow position: | chr3:59000833-59001113 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 50 |
| Conread position: | 3-287 |
| Cow position: | chr3:15954168-15954445 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 0 |
| Conread position: | 3-287 |
| Cow position: | chr3:54434893-54434605 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 57 |
| Conread position: | 3-287 |
| Cow position: | chr3:61840195-61839922 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 34 |
| Conread position: | 3-290 |
| Cow position: | chr3:80081904-80082189 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 84 |
| Conread position: | 3-291 |
| Cow position: | chr3:6853586-6853876 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 158 |
| Conread position: | 3-291 |
| Cow position: | chr3:18067054-18066761 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 167 |
| Conread position: | 3-291 |
| Cow position: | chr3:18393469-18393755 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 162 |
| Conread position: | 3-291 |
| Cow position: | chr3:39171564-39171877 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 3-291 |
| Cow position: | chr3:48241535-48241248 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 158 |
| Conread position: | 3-291 |
| Cow position: | chr3:59691816-59691531 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 213 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 77, 10 |
| Conread position: | 3-291 |
| Cow position: | chr3:71231317-71231033 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 87 |
| Conread position: | 3-294 |
| Cow position: | chr3:30701225-30700941 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 28, 34 |
| Conread position: | 4-160 |
| Cow position: | chr3:23270016-23269854 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 4-206 |
| Cow position: | chr3:18855013-18854805 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 56, 167 |
| Conread position: | 5-167 |
| Cow position: | chr3:73764279-73764450 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 54, 30 |
| Conread position: | 5-197 |
| Cow position: | chr3:49731724-49731916 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 49, 161 |
| Conread position: | 5-287 |
| Cow position: | chr3:10347272-10346978 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 223 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 26, 32 |
| Conread position: | 5-291 |
| Cow position: | chr3:59515021-59514750 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 216 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 97, 53 |
| Conread position: | 7-287 |
| Cow position: | chr3:75479917-75479649 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 207 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 80, 99 |
| Conread position: | 8-268 |
| Cow position: | chr3:50069678-50069429 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 19, 29 |
| Conread position: | 9-294 |
| Cow position: | chr3:4461578-4461864 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 65 |
| Conread position: | 14-170 |
| Cow position: | chr3:56476588-56476422 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 15-288 |
| Cow position: | chr3:53384377-53384653 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 24 |
| Conread position: | 16-208 |
| Cow position: | chr3:19006569-19006377 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 81, 149 |
| Conread position: | 16-288 |
| Cow position: | chr3:48362990-48362713 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 210 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 69, 56 |
Show alignments to all cow chromosomes.