Cow genome map

Conread name: rlin01_c13r1.y1

Conread position: 1-145
Cow position: chr4:38935293-38935141 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 121
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 97, 0

Conread position: 1-174
Cow position: chr4:18576837-18577022 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 145
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 29, 36

Conread position: 1-179
Cow position: chr4:29291456-29291272 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 140
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 101, 165

Conread position: 1-201
Cow position: chr4:23847111-23847318 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 165
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 30, 36

Conread position: 1-202
Cow position: chr4:19744822-19744621 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 150
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 26, 36

Conread position: 1-205
Cow position: chr4:20299210-20298998 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 173
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 100, 69

Conread position: 1-218
Cow position: chr4:7571346-7571125 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 171
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 103, 60

Conread position: 1-224
Cow position: chr4:51728013-51727793 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 173
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 30, 36

Conread position: 1-276
Cow position: chr4:28399483-28399746 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 196
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 54, 0

Conread position: 1-285
Cow position: chr4:31136688-31136403 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 165

Conread position: 1-286
Cow position: chr4:20139580-20139880 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 232
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 30, 36

Conread position: 1-287
Cow position: chr4:47730792-47730518 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 31

Conread position: 1-287
Cow position: chr4:53999572-53999873 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 0

Conread position: 1-291
Cow position: chr4:53208231-53207951 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 218
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 30, 36

Conread position: 1-291
Cow position: chr4:65919550-65919265 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 164

Conread position: 1-293
Cow position: chr4:27292019-27292318 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 171

Conread position: 1-302
Cow position: chr4:8947329-8947030 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 10

Conread position: 2-133
Cow position: chr4:34022651-34022787 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 110
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 29, 35

Conread position: 2-286
Cow position: chr4:61391268-61391551 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 207
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 101, 167

Conread position: 2-287
Cow position: chr4:53209175-53208886 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 220
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 57, 171

Conread position: 2-291
Cow position: chr4:3687859-3687568 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 162

Conread position: 3-144
Cow position: chr4:36724973-36724826 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 118
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 101, 0

Conread position: 3-160
Cow position: chr4:13871853-13871697 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 114
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 50, 0

Conread position: 3-167
Cow position: chr4:13256023-13255854 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 121
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 100, 0

Conread position: 3-174
Cow position: chr4:21232939-21233116 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 142
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 28, 34

Conread position: 3-196
Cow position: chr4:43909678-43909490 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 150
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 56, 79

Conread position: 3-198
Cow position: chr4:55395696-55395504 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 151
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 56, 159

Conread position: 3-202
Cow position: chr4:46597313-46597115 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 154
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 56, 162

Conread position: 3-206
Cow position: chr4:29237223-29237422 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 159
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 98, 129

Conread position: 3-206
Cow position: chr4:52748523-52748730 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 166
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 101, 166

Conread position: 3-208
Cow position: chr4:11021719-11021925 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 161
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 56, 162

Conread position: 3-208
Cow position: chr4:28772133-28772341 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 156
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 24, 34

Conread position: 3-208
Cow position: chr4:63349540-63349750 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 166
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 62, 143

Conread position: 3-225
Cow position: chr4:19582682-19582907 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 175
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 28, 34

Conread position: 3-241
Cow position: chr4:45662574-45662807 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 63

Conread position: 3-254
Cow position: chr4:37935349-37935601 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 197
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 28, 34

Conread position: 3-268
Cow position: chr4:68764456-68764183 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 192
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 62, 151

Conread position: 3-277
Cow position: chr4:49158849-49159110 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 202
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 73, 162

Conread position: 3-282
Cow position: chr4:52166918-52167213 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 209
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 82, 200

Conread position: 3-285
Cow position: chr4:11099734-11100015 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 215
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 99, 165

Conread position: 3-287
Cow position: chr4:41301055-41301353 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 218
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 64, 167

Conread position: 3-291
Cow position: chr4:11901626-11901917 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 165

Conread position: 3-291
Cow position: chr4:39009901-39009612 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 215
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 90, 167

Conread position: 3-291
Cow position: chr4:54501514-54501806 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 166

Conread position: 3-291
Cow position: chr4:67392894-67392604 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 99

Conread position: 3-310
Cow position: chr4:48137846-48137538 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 231
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 62, 168

Conread position: 4-283
Cow position: chr4:285583-285307 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 205
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 59, 149

Conread position: 4-291
Cow position: chr4:58248335-58248054 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 210
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 85, 56

Conread position: 5-215
Cow position: chr4:42266819-42267023 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 150
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 92, 82

Conread position: 5-291
Cow position: chr4:37619954-37620244 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 165

Conread position: 8-156
Cow position: chr4:44902366-44902215 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 120
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 85, 0

Conread position: 8-178
Cow position: chr4:56435738-56435555 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 134
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 93, 0

Conread position: 8-254
Cow position: chr4:19597386-19597634 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 193
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 93, 130

Conread position: 12-291
Cow position: chr4:49794598-49794325 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 211
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 47, 64

Conread position: 15-291
Cow position: chr4:30574374-30574099 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 146

Conread position: 16-287
Cow position: chr4:59871407-59871152 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 205
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 73, 140

Conread position: 16-327
Cow position: chr4:45589677-45589980 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 201
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 43, 56

Show alignments to all cow chromosomes.