Cow genome map
| Conread name: | rlin01_c13r1.y1 |
| Conread position: | 1-105 |
| Cow position: | chr5:46512793-46512897 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 87 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-124 |
| Cow position: | chr5:19294519-19294640 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 101, 60 |
| Conread position: | 1-190 |
| Cow position: | chr5:7044737-7044941 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 101, 164 |
| Conread position: | 1-196 |
| Cow position: | chr5:56070826-56070624 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 100, 171 |
| Conread position: | 1-207 |
| Cow position: | chr5:25035273-25035467 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 165 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 1-224 |
| Cow position: | chr5:19278730-19278950 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 101, 157 |
| Conread position: | 1-243 |
| Cow position: | chr5:31640390-31640151 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 52, 175 |
| Conread position: | 1-267 |
| Cow position: | chr5:72150217-72149951 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 163 |
| Conread position: | 1-270 |
| Cow position: | chr5:50533417-50533683 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 202 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 102, 164 |
| Conread position: | 1-275 |
| Cow position: | chr5:65752827-65752551 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 212 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 58, 165 |
| Conread position: | 1-279 |
| Cow position: | chr5:4797346-4797625 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 163 |
| Conread position: | 1-287 |
| Cow position: | chr5:14314495-14314203 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 171 |
| Conread position: | 1-287 |
| Cow position: | chr5:57935139-57935433 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 172 |
| Conread position: | 1-287 |
| Cow position: | chr5:74015910-74015620 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 30, 41 |
| Conread position: | 1-291 |
| Cow position: | chr5:21828836-21828532 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 170 |
| Conread position: | 1-291 |
| Cow position: | chr5:29903548-29903846 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 150 |
| Conread position: | 1-291 |
| Cow position: | chr5:34916109-34915817 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 161 |
| Conread position: | 1-291 |
| Cow position: | chr5:35826573-35826277 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 97, 232 |
| Conread position: | 1-291 |
| Cow position: | chr5:47601789-47601487 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 186 |
| Conread position: | 1-291 |
| Cow position: | chr5:49559139-49558838 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 231 |
| Conread position: | 2-202 |
| Cow position: | chr5:30253710-30253510 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 96, 150 |
| Conread position: | 2-208 |
| Cow position: | chr5:73253061-73252855 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 29, 35 |
| Conread position: | 3-196 |
| Cow position: | chr5:46122382-46122578 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 99, 175 |
| Conread position: | 3-198 |
| Cow position: | chr5:64758803-64758998 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 62, 76 |
| Conread position: | 3-200 |
| Cow position: | chr5:36855173-36854979 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 56, 159 |
| Conread position: | 3-200 |
| Cow position: | chr5:41165054-41164855 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 74, 164 |
| Conread position: | 3-202 |
| Cow position: | chr5:45036989-45036785 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 56, 46 |
| Conread position: | 3-204 |
| Cow position: | chr5:4032024-4032226 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 56, 158 |
| Conread position: | 3-206 |
| Cow position: | chr5:48178709-48178915 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 99, 15 |
| Conread position: | 3-206 |
| Cow position: | chr5:56433772-56433562 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 3-206 |
| Cow position: | chr5:58144633-58144845 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 62, 168 |
| Conread position: | 3-208 |
| Cow position: | chr5:34300884-34300684 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 111, 101 |
| Conread position: | 3-236 |
| Cow position: | chr5:17999524-17999765 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 62, 169 |
| Conread position: | 3-248 |
| Cow position: | chr5:21964255-21963998 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 56, 179 |
| Conread position: | 3-263 |
| Cow position: | chr5:43474815-43474559 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 95, 166 |
| Conread position: | 3-275 |
| Cow position: | chr5:16509064-16508788 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 217 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 56, 141 |
| Conread position: | 3-285 |
| Cow position: | chr5:58856072-58855784 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 164 |
| Conread position: | 3-286 |
| Cow position: | chr5:72564730-72564440 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 213 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 56, 167 |
| Conread position: | 3-286 |
| Cow position: | chr5:75828770-75829048 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 93, 8 |
| Conread position: | 3-287 |
| Cow position: | chr5:26377701-26377984 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 34 |
| Conread position: | 3-287 |
| Cow position: | chr5:26990360-26990078 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 165 |
| Conread position: | 3-290 |
| Cow position: | chr5:65932960-65933252 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 51, 149 |
| Conread position: | 3-291 |
| Cow position: | chr5:16206187-16206466 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 102 |
| Conread position: | 3-291 |
| Cow position: | chr5:34115618-34115324 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 85 |
| Conread position: | 3-291 |
| Cow position: | chr5:35145317-35145026 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 163 |
| Conread position: | 3-291 |
| Cow position: | chr5:35763243-35762966 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 36 |
| Conread position: | 3-294 |
| Cow position: | chr5:21525139-21524838 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 173 |
| Conread position: | 3-295 |
| Cow position: | chr5:56467668-56467377 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 218 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 56, 166 |
| Conread position: | 4-287 |
| Cow position: | chr5:60715391-60715675 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 208 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 64, 159 |
| Conread position: | 4-289 |
| Cow position: | chr5:61840159-61839866 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 219 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 54, 176 |
| Conread position: | 4-291 |
| Cow position: | chr5:33414442-33414729 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 138 |
| Conread position: | 5-208 |
| Cow position: | chr5:37814588-37814382 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 82, 44 |
| Conread position: | 5-279 |
| Cow position: | chr5:63917444-63917716 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 210 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 84, 165 |
| Conread position: | 5-291 |
| Cow position: | chr5:46103974-46104264 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 214 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 76, 147 |
| Conread position: | 5-291 |
| Cow position: | chr5:47313442-47313149 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 161 |
| Conread position: | 5-291 |
| Cow position: | chr5:67932498-67932788 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 82, 162 |
| Conread position: | 5-294 |
| Cow position: | chr5:16185053-16184765 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 161 |
| Conread position: | 7-160 |
| Cow position: | chr5:29212908-29212749 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 9-291 |
| Cow position: | chr5:30302855-30302574 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 155 |
| Conread position: | 15-291 |
| Cow position: | chr5:12322845-12323118 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 16, 22 |
| Conread position: | 15-291 |
| Cow position: | chr5:20407711-20407982 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 159 |
| Conread position: | 15-291 |
| Cow position: | chr5:20783580-20783303 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 88, 154 |
| Conread position: | 16-206 |
| Cow position: | chr5:26477057-26477232 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 72, 0 |
Show alignments to all cow chromosomes.