Cow genome map
| Conread name: | rlin01_c13r1.y1 |
| Conread position: | 1-160 |
| Cow position: | chr6:16423683-16423514 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 83, 15 |
| Conread position: | 1-160 |
| Cow position: | chr6:63720179-63720014 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 1-199 |
| Cow position: | chr6:15923015-15923215 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 97, 168 |
| Conread position: | 1-208 |
| Cow position: | chr6:4383470-4383266 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 171 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 30, 41 |
| Conread position: | 1-267 |
| Cow position: | chr6:38218653-38218378 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 30, 12 |
| Conread position: | 1-287 |
| Cow position: | chr6:8637259-8636969 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 165 |
| Conread position: | 1-290 |
| Cow position: | chr6:11192483-11192761 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-290 |
| Cow position: | chr6:65871014-65870716 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 174 |
| Conread position: | 1-291 |
| Cow position: | chr6:16411175-16410886 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 159 |
| Conread position: | 1-291 |
| Cow position: | chr6:46465807-46465518 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 1-291 |
| Cow position: | chr6:61269294-61269025 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 1-294 |
| Cow position: | chr6:2013003-2012706 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 165 |
| Conread position: | 2-220 |
| Cow position: | chr6:20097981-20098203 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 102, 167 |
| Conread position: | 2-291 |
| Cow position: | chr6:5095564-5095864 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 170 |
| Conread position: | 2-291 |
| Cow position: | chr6:23695977-23695688 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 164 |
| Conread position: | 3-102 |
| Cow position: | chr6:10225657-10225756 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 83 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-102 |
| Cow position: | chr6:19351172-19351271 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 83 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-168 |
| Cow position: | chr6:37149170-37148999 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 3-196 |
| Cow position: | chr6:17997334-17997530 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 60, 8 |
| Conread position: | 3-198 |
| Cow position: | chr6:21110947-21110752 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 56, 81 |
| Conread position: | 3-201 |
| Cow position: | chr6:899308-899504 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 100, 150 |
| Conread position: | 3-203 |
| Cow position: | chr6:38614798-38614602 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 86, 52 |
| Conread position: | 3-205 |
| Cow position: | chr6:389152-388947 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 93, 143 |
| Conread position: | 3-206 |
| Cow position: | chr6:67950934-67950734 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 169 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 97, 32 |
| Conread position: | 3-208 |
| Cow position: | chr6:130181-130391 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 98, 16 |
| Conread position: | 3-208 |
| Cow position: | chr6:38441158-38440955 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 57, 160 |
| Conread position: | 3-208 |
| Cow position: | chr6:66874332-66874135 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 99, 72 |
| Conread position: | 3-209 |
| Cow position: | chr6:48344314-48344100 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 86, 167 |
| Conread position: | 3-228 |
| Cow position: | chr6:56849994-56849771 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 86, 160 |
| Conread position: | 3-267 |
| Cow position: | chr6:57164409-57164141 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 51, 121 |
| Conread position: | 3-283 |
| Cow position: | chr6:18582828-18583094 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 32, 37 |
| Conread position: | 3-283 |
| Cow position: | chr6:32210646-32210931 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 216 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 28, 34 |
| Conread position: | 3-288 |
| Cow position: | chr6:15937869-15938171 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 216 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 87, 151 |
| Conread position: | 3-289 |
| Cow position: | chr6:10332108-10332414 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 57, 77 |
| Conread position: | 3-290 |
| Cow position: | chr6:44099069-44098779 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 222 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 62, 169 |
| Conread position: | 3-291 |
| Cow position: | chr6:20230846-20231135 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 157 |
| Conread position: | 3-291 |
| Cow position: | chr6:36652401-36652120 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 209 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 98, 163 |
| Conread position: | 3-291 |
| Cow position: | chr6:51674895-51674600 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 210 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 57, 161 |
| Conread position: | 3-331 |
| Cow position: | chr6:54867496-54867161 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 246 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 61, 149 |
| Conread position: | 4-193 |
| Cow position: | chr6:57405142-57405336 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 70, 160 |
| Conread position: | 4-224 |
| Cow position: | chr6:49002752-49002968 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 56, 157 |
| Conread position: | 4-291 |
| Cow position: | chr6:35842636-35842351 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 160 |
| Conread position: | 5-160 |
| Cow position: | chr6:48425341-48425506 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 5-174 |
| Cow position: | chr6:66131286-66131110 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 60, 162 |
| Conread position: | 5-283 |
| Cow position: | chr6:28477158-28476876 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 5-288 |
| Cow position: | chr6:51835378-51835094 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 162 |
| Conread position: | 5-291 |
| Cow position: | chr6:66531841-66532112 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 210 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 222, 83 |
| Conread position: | 5-295 |
| Cow position: | chr6:4864568-4864852 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 156 |
| Conread position: | 6-187 |
| Cow position: | chr6:38641473-38641292 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 95, 159 |
| Conread position: | 6-291 |
| Cow position: | chr6:58076209-58075918 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 59, 169 |
| Conread position: | 8-294 |
| Cow position: | chr6:13687836-13688122 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 74 |
| Conread position: | 15-208 |
| Cow position: | chr6:15300848-15301044 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 44, 152 |
| Conread position: | 15-287 |
| Cow position: | chr6:15305551-15305283 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 22 |
| Conread position: | 15-294 |
| Cow position: | chr6:5302446-5302712 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 74, 40 |
Show alignments to all cow chromosomes.