Cow genome map
| Conread name: | rlin01_c13r1.y1 |
| Conread position: | 1-200 |
| Cow position: | chr7:51319785-51319583 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 100, 69 |
| Conread position: | 1-208 |
| Cow position: | chr7:3256367-3256568 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 1-208 |
| Cow position: | chr7:17713486-17713689 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 101, 171 |
| Conread position: | 1-240 |
| Cow position: | chr7:65122329-65122085 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 60, 77 |
| Conread position: | 1-258 |
| Cow position: | chr7:32915096-32914840 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 206 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 84, 167 |
| Conread position: | 1-282 |
| Cow position: | chr7:38024326-38024609 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 99, 168 |
| Conread position: | 1-283 |
| Cow position: | chr7:37361867-37361584 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 165 |
| Conread position: | 1-287 |
| Cow position: | chr7:33697942-33697673 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 1-287 |
| Cow position: | chr7:62793772-62793480 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 1-290 |
| Cow position: | chr7:28584233-28583941 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 73 |
| Conread position: | 1-291 |
| Cow position: | chr7:6041962-6041693 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 216 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 93, 15 |
| Conread position: | 1-291 |
| Cow position: | chr7:14632361-14632069 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 223 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 100, 10 |
| Conread position: | 1-291 |
| Cow position: | chr7:23619099-23619393 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 168 |
| Conread position: | 1-291 |
| Cow position: | chr7:26631827-26632118 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 1-291 |
| Cow position: | chr7:32240615-32240326 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 220 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 102, 44 |
| Conread position: | 1-291 |
| Cow position: | chr7:49751113-49750819 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 1-294 |
| Cow position: | chr7:14542072-14542362 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 110 |
| Conread position: | 1-294 |
| Cow position: | chr7:35275094-35275379 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 142 |
| Conread position: | 1-298 |
| Cow position: | chr7:56886798-56887085 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 1-300 |
| Cow position: | chr7:10512725-10513030 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 10 |
| Conread position: | 2-183 |
| Cow position: | chr7:59168257-59168073 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 29, 35 |
| Conread position: | 3-152 |
| Cow position: | chr7:32372843-32372684 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 3-167 |
| Cow position: | chr7:600319-600151 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 101, 57 |
| Conread position: | 3-178 |
| Cow position: | chr7:12201938-12202117 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 3-196 |
| Cow position: | chr7:42894430-42894238 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 98, 119 |
| Conread position: | 3-206 |
| Cow position: | chr7:31881661-31881465 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 99, 112 |
| Conread position: | 3-208 |
| Cow position: | chr7:45747860-45748057 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 86, 57 |
| Conread position: | 3-208 |
| Cow position: | chr7:58862902-58863104 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 28, 34 |
| Conread position: | 3-216 |
| Cow position: | chr7:40008805-40008585 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 56, 169 |
| Conread position: | 3-232 |
| Cow position: | chr7:65689545-65689779 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 86, 52 |
| Conread position: | 3-245 |
| Cow position: | chr7:14536296-14536530 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 62, 117 |
| Conread position: | 3-251 |
| Cow position: | chr7:59843770-59844029 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 84, 164 |
| Conread position: | 3-252 |
| Cow position: | chr7:21650087-21649834 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 167 |
| Conread position: | 3-253 |
| Cow position: | chr7:14450325-14450086 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 187 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 3-285 |
| Cow position: | chr7:36746307-36746017 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 98, 166 |
| Conread position: | 3-286 |
| Cow position: | chr7:47513703-47513992 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 222 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 36, 42 |
| Conread position: | 3-286 |
| Cow position: | chr7:53034336-53034615 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 120 |
| Conread position: | 3-287 |
| Cow position: | chr7:60483442-60483727 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 158 |
| Conread position: | 3-291 |
| Cow position: | chr7:10069728-10070010 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 73 |
| Conread position: | 3-291 |
| Cow position: | chr7:24778131-24778419 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 149 |
| Conread position: | 3-291 |
| Cow position: | chr7:26838641-26838346 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 121 |
| Conread position: | 3-291 |
| Cow position: | chr7:28090217-28089933 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 159 |
| Conread position: | 3-291 |
| Cow position: | chr7:46823654-46823371 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 226 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 57, 166 |
| Conread position: | 3-294 |
| Cow position: | chr7:19267384-19267680 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 177 |
| Conread position: | 3-306 |
| Cow position: | chr7:40321471-40321171 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 62, 164 |
| Conread position: | 3-320 |
| Cow position: | chr7:13593751-13593439 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 85 |
| Conread position: | 4-115 |
| Cow position: | chr7:9800337-9800226 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 90 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-206 |
| Cow position: | chr7:44049388-44049587 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 81, 66 |
| Conread position: | 5-247 |
| Cow position: | chr7:53097570-53097335 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 80, 98 |
| Conread position: | 5-284 |
| Cow position: | chr7:39930274-39929980 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 218 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 86, 130 |
| Conread position: | 5-291 |
| Cow position: | chr7:40189536-40189244 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 212 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 84, 56 |
| Conread position: | 5-291 |
| Cow position: | chr7:42244713-42245019 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 99, 14 |
| Conread position: | 6-151 |
| Cow position: | chr7:61790373-61790529 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 7-225 |
| Cow position: | chr7:36278276-36278052 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 24, 30 |
| Conread position: | 11-206 |
| Cow position: | chr7:42460407-42460212 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 50, 153 |
| Conread position: | 11-287 |
| Cow position: | chr7:18247829-18248112 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 20, 26 |
| Conread position: | 12-285 |
| Cow position: | chr7:45927182-45927452 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 154 |
| Conread position: | 15-291 |
| Cow position: | chr7:35652102-35652384 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 154 |
| Conread position: | 15-294 |
| Cow position: | chr7:20968407-20968121 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 165 |
| Conread position: | 16-291 |
| Cow position: | chr7:42296106-42296377 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 142 |
| Conread position: | 18-285 |
| Cow position: | chr7:23477355-23477606 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 70, 104 |
Show alignments to all cow chromosomes.