Cow genome map
| Conread name: | rlin01_c13r1.y1 |
| Conread position: | 1-151 |
| Cow position: | chr8:6484978-6485141 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 1-165 |
| Cow position: | chr8:31297222-31297049 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 1-169 |
| Cow position: | chr8:3339042-3338862 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 17, 38 |
| Conread position: | 1-170 |
| Cow position: | chr8:5979896-5979720 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 1-196 |
| Cow position: | chr8:32988698-32988501 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 1-208 |
| Cow position: | chr8:6073863-6074053 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-208 |
| Cow position: | chr8:10434763-10434552 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 106, 163 |
| Conread position: | 1-222 |
| Cow position: | chr8:57389242-57389018 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 100, 176 |
| Conread position: | 1-235 |
| Cow position: | chr8:2882019-2881778 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 87, 165 |
| Conread position: | 1-284 |
| Cow position: | chr8:15391207-15391484 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 160 |
| Conread position: | 1-287 |
| Cow position: | chr8:4924523-4924228 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 172 |
| Conread position: | 1-287 |
| Cow position: | chr8:32621037-32621332 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 1-287 |
| Cow position: | chr8:38464964-38464675 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 101, 30 |
| Conread position: | 1-290 |
| Cow position: | chr8:24371762-24372048 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 223 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 1-291 |
| Cow position: | chr8:24390243-24390533 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 221 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 64, 169 |
| Conread position: | 1-291 |
| Cow position: | chr8:29262730-29262448 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 211 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 52, 160 |
| Conread position: | 1-295 |
| Cow position: | chr8:15394906-15395197 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 71 |
| Conread position: | 2-102 |
| Cow position: | chr8:46616367-46616267 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 82 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-206 |
| Cow position: | chr8:42762477-42762682 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 102, 163 |
| Conread position: | 2-206 |
| Cow position: | chr8:42794364-42794564 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 104, 29 |
| Conread position: | 2-291 |
| Cow position: | chr8:33994116-33993829 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 162 |
| Conread position: | 3-129 |
| Cow position: | chr8:53929629-53929760 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 3-160 |
| Cow position: | chr8:4591120-4591287 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 28, 34 |
| Conread position: | 3-160 |
| Cow position: | chr8:16487353-16487521 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 3-174 |
| Cow position: | chr8:53558655-53558830 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 56, 8 |
| Conread position: | 3-174 |
| Cow position: | chr8:54031827-54031650 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 56, 162 |
| Conread position: | 3-176 |
| Cow position: | chr8:21382740-21382925 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 3-186 |
| Cow position: | chr8:20683923-20683738 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 46, 161 |
| Conread position: | 3-202 |
| Cow position: | chr8:44437719-44437517 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 62, 164 |
| Conread position: | 3-221 |
| Cow position: | chr8:38780662-38780441 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 73, 139 |
| Conread position: | 3-285 |
| Cow position: | chr8:26625825-26625541 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 52 |
| Conread position: | 3-287 |
| Cow position: | chr8:3015426-3015138 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 219 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 100, 168 |
| Conread position: | 3-290 |
| Cow position: | chr8:6232945-6233236 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 166 |
| Conread position: | 3-291 |
| Cow position: | chr8:3704573-3704282 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 164 |
| Conread position: | 3-291 |
| Cow position: | chr8:7609988-7610265 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 3-291 |
| Cow position: | chr8:9917833-9917553 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 65 |
| Conread position: | 3-291 |
| Cow position: | chr8:9942572-9942864 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 223 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 52, 172 |
| Conread position: | 3-291 |
| Cow position: | chr8:20837078-20836788 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 161 |
| Conread position: | 3-291 |
| Cow position: | chr8:21826799-21827083 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 164 |
| Conread position: | 3-291 |
| Cow position: | chr8:26600504-26600218 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 214 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 99, 50 |
| Conread position: | 3-291 |
| Cow position: | chr8:29026681-29026959 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 92 |
| Conread position: | 3-291 |
| Cow position: | chr8:31253765-31253469 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 52, 167 |
| Conread position: | 3-291 |
| Cow position: | chr8:49721094-49720796 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 57, 169 |
| Conread position: | 3-291 |
| Cow position: | chr8:54572598-54572307 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 219 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 58, 168 |
| Conread position: | 3-294 |
| Cow position: | chr8:25083230-25082925 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 227 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 60, 174 |
| Conread position: | 3-294 |
| Cow position: | chr8:39144703-39144428 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 53 |
| Conread position: | 4-199 |
| Cow position: | chr8:43687497-43687293 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 56, 165 |
| Conread position: | 4-287 |
| Cow position: | chr8:56824061-56824358 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 27, 38 |
| Conread position: | 5-288 |
| Cow position: | chr8:16030263-16030547 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 58, 165 |
| Conread position: | 5-291 |
| Cow position: | chr8:47860988-47861272 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 7, 162 |
| Conread position: | 7-281 |
| Cow position: | chr8:10456416-10456126 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 211 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 9, 34 |
| Conread position: | 11-299 |
| Cow position: | chr8:21268579-21268867 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 226 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 20, 26 |
| Conread position: | 11-307 |
| Cow position: | chr8:26386274-26386574 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 221 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 69, 155 |
| Conread position: | 12-236 |
| Cow position: | chr8:29030155-29030383 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 92, 159 |
| Conread position: | 15-287 |
| Cow position: | chr8:58636704-58636435 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 89, 61 |
| Conread position: | 15-288 |
| Cow position: | chr8:12058663-12058377 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 222 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 44, 164 |
| Conread position: | 15-289 |
| Cow position: | chr8:29765198-29764918 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 153 |
| Conread position: | 15-291 |
| Cow position: | chr8:10400243-10399974 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 61, 40 |
| Conread position: | 15-291 |
| Cow position: | chr8:10699517-10699796 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 153 |
| Conread position: | 15-291 |
| Cow position: | chr8:24871931-24872207 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 210 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 47, 147 |
| Conread position: | 16-295 |
| Cow position: | chr8:54195478-54195197 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 75, 149 |
Show alignments to all cow chromosomes.