Cow genome map
| Conread name: | rlin01_c13r1.y1 |
| Conread position: | 1-103 |
| Cow position: | chr9:9654227-9654125 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 85 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-179 |
| Cow position: | chr9:8562922-8563115 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 1-198 |
| Cow position: | chr9:10144392-10144186 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 1-200 |
| Cow position: | chr9:60037738-60037943 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 103, 168 |
| Conread position: | 1-208 |
| Cow position: | chr9:9405964-9405759 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 30, 13 |
| Conread position: | 1-241 |
| Cow position: | chr9:10118580-10118337 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 92, 171 |
| Conread position: | 1-278 |
| Cow position: | chr9:22440425-22440138 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 65 |
| Conread position: | 1-284 |
| Cow position: | chr9:50606864-50606581 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 207 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 99, 164 |
| Conread position: | 1-290 |
| Cow position: | chr9:44921306-44921034 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 1-291 |
| Cow position: | chr9:44831968-44831678 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 17 |
| Conread position: | 2-186 |
| Cow position: | chr9:9403090-9402911 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 102, 123 |
| Conread position: | 3-106 |
| Cow position: | chr9:8524923-8525024 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 87 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 3-160 |
| Cow position: | chr9:51620524-51620690 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 101, 74 |
| Conread position: | 3-171 |
| Cow position: | chr9:16182403-16182226 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 104, 166 |
| Conread position: | 3-199 |
| Cow position: | chr9:9823419-9823232 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 3-200 |
| Cow position: | chr9:3070334-3070135 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 56, 159 |
| Conread position: | 3-204 |
| Cow position: | chr9:40542205-40542405 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 59, 162 |
| Conread position: | 3-205 |
| Cow position: | chr9:17310476-17310269 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 62, 123 |
| Conread position: | 3-206 |
| Cow position: | chr9:55084211-55084003 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 57, 50 |
| Conread position: | 3-236 |
| Cow position: | chr9:22227996-22227761 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 163 |
| Conread position: | 3-236 |
| Cow position: | chr9:29034944-29034704 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 190 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 80, 74 |
| Conread position: | 3-254 |
| Cow position: | chr9:29330556-29330308 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 60, 138 |
| Conread position: | 3-278 |
| Cow position: | chr9:5433724-5433997 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 161 |
| Conread position: | 3-285 |
| Cow position: | chr9:7409864-7410155 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 168 |
| Conread position: | 3-285 |
| Cow position: | chr9:29006649-29006940 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 223 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 99, 75 |
| Conread position: | 3-286 |
| Cow position: | chr9:5500944-5501221 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 160 |
| Conread position: | 3-287 |
| Cow position: | chr9:5509810-5510099 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 8 |
| Conread position: | 3-287 |
| Cow position: | chr9:42998381-42998087 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 3-288 |
| Cow position: | chr9:1952182-1951894 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 166 |
| Conread position: | 3-288 |
| Cow position: | chr9:8998443-8998731 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 215 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 95, 164 |
| Conread position: | 3-291 |
| Cow position: | chr9:18002865-18002573 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 169 |
| Conread position: | 3-291 |
| Cow position: | chr9:28726634-28726352 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 147 |
| Conread position: | 3-291 |
| Cow position: | chr9:30402334-30402038 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 167 |
| Conread position: | 3-291 |
| Cow position: | chr9:32812431-32812724 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 170 |
| Conread position: | 3-291 |
| Cow position: | chr9:42445893-42445594 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 218 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 60, 199 |
| Conread position: | 3-294 |
| Cow position: | chr9:34000535-34000230 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 8 |
| Conread position: | 3-294 |
| Cow position: | chr9:37069483-37069169 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 3-295 |
| Cow position: | chr9:62442377-62442664 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 68 |
| Conread position: | 3-335 |
| Cow position: | chr9:49279561-49279875 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 117 |
| Conread position: | 4-206 |
| Cow position: | chr9:35849987-35850192 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 97, 165 |
| Conread position: | 4-273 |
| Cow position: | chr9:21030396-21030678 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 55, 173 |
| Conread position: | 5-174 |
| Cow position: | chr9:55118168-55118345 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 98, 141 |
| Conread position: | 5-188 |
| Cow position: | chr9:64559796-64559610 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 60, 162 |
| Conread position: | 5-203 |
| Cow position: | chr9:34468495-34468302 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 98, 55 |
| Conread position: | 5-248 |
| Cow position: | chr9:32371672-32371431 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 189 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 26, 32 |
| Conread position: | 5-287 |
| Cow position: | chr9:20989369-20989073 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 54, 168 |
| Conread position: | 6-291 |
| Cow position: | chr9:38184395-38184099 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 219 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 56, 166 |
| Conread position: | 9-291 |
| Cow position: | chr9:3410862-3411147 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 161 |
| Conread position: | 9-291 |
| Cow position: | chr9:57951230-57950952 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 154 |
| Conread position: | 10-294 |
| Cow position: | chr9:22616718-22617001 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 65 |
| Conread position: | 11-287 |
| Cow position: | chr9:7634368-7634639 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 152 |
| Conread position: | 15-254 |
| Cow position: | chr9:3924719-3924960 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 189 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 86, 150 |
| Conread position: | 15-272 |
| Cow position: | chr9:21460054-21459795 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 207 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 74, 39 |
| Conread position: | 15-291 |
| Cow position: | chr9:35100966-35101252 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 219 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 74, 151 |
| Conread position: | 17-208 |
| Cow position: | chr9:26310655-26310854 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 88, 156 |
| Conread position: | 18-291 |
| Cow position: | chr9:28773223-28773496 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 142 |
| Conread position: | 19-199 |
| Cow position: | chr9:18073011-18072831 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 68, 142 |
Show alignments to all cow chromosomes.