Cow genome map

Conread name: rlin01_c13r1.y1

Conread position: 1-102
Cow position: chrX:616291-616392 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 90
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 30, 36

Conread position: 1-102
Cow position: chrX:31252389-31252288 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 85
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 30, 38

Conread position: 1-144
Cow position: chrX:45759363-45759215 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 117
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 30, 36

Conread position: 1-146
Cow position: chrX:36067984-36067835 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 101, 54

Conread position: 1-170
Cow position: chrX:46429889-46430066 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 133
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 100, 10

Conread position: 1-201
Cow position: chrX:9201521-9201314 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 161
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 29, 36

Conread position: 1-208
Cow position: chrX:23514044-23514258 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 170
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 103, 160

Conread position: 1-208
Cow position: chrX:26875912-26876121 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 163
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 27, 36

Conread position: 1-208
Cow position: chrX:43567893-43567699 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 152
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 101, 84

Conread position: 1-287
Cow position: chrX:6414019-6413727 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 209
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 66, 167

Conread position: 1-287
Cow position: chrX:11656063-11655759 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 172

Conread position: 1-287
Cow position: chrX:33855262-33855559 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 222
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 100, 168

Conread position: 1-291
Cow position: chrX:20801746-20801454 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 206
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 84, 124

Conread position: 1-291
Cow position: chrX:24424417-24424715 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 211
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 82, 168

Conread position: 1-291
Cow position: chrX:34401969-34401675 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 166

Conread position: 1-291
Cow position: chrX:35224267-35223979 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 36

Conread position: 1-294
Cow position: chrX:13785392-13785704 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 232
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 29, 38

Conread position: 1-294
Cow position: chrX:31436447-31436154 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 13

Conread position: 1-294
Cow position: chrX:43115123-43114846 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 109

Conread position: 1-315
Cow position: chrX:40557710-40558025 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 36

Conread position: 2-137
Cow position: chrX:27145593-27145447 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 116
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 29, 35

Conread position: 3-170
Cow position: chrX:29509472-29509652 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 134
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 52, 0

Conread position: 3-204
Cow position: chrX:11589618-11589828 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 159
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 57, 166

Conread position: 3-206
Cow position: chrX:9635216-9635419 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 160
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 86, 41

Conread position: 3-217
Cow position: chrX:40116390-40116175 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 162
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 101, 166

Conread position: 3-227
Cow position: chrX:20151819-20151591 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 177
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 55, 166

Conread position: 3-245
Cow position: chrX:8925670-8925429 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 190
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 98, 167

Conread position: 3-245
Cow position: chrX:30922155-30921908 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 184
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 57, 141

Conread position: 3-245
Cow position: chrX:35413590-35413353 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 85

Conread position: 3-284
Cow position: chrX:28845800-28845528 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 77

Conread position: 3-290
Cow position: chrX:42247217-42247498 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 57

Conread position: 3-291
Cow position: chrX:5017445-5017729 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 160

Conread position: 3-291
Cow position: chrX:17498054-17497773 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 0

Conread position: 3-291
Cow position: chrX:18694955-18695244 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 57

Conread position: 3-291
Cow position: chrX:35681310-35681012 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 121

Conread position: 3-291
Cow position: chrX:38439447-38439151 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 176

Conread position: 3-291
Cow position: chrX:42461775-42462071 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 168

Conread position: 3-291
Cow position: chrX:44396987-44396697 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 210
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 95, 55

Conread position: 4-291
Cow position: chrX:7571871-7571583 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 57

Conread position: 5-287
Cow position: chrX:40826784-40827066 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 210
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 55, 155

Conread position: 5-288
Cow position: chrX:14924968-14924680 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 151

Conread position: 5-291
Cow position: chrX:12116013-12115718 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 216
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 58, 168

Conread position: 5-291
Cow position: chrX:23563823-23564120 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 224
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 54, 171

Conread position: 5-291
Cow position: chrX:48287482-48287763 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 209
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 84, 116

Conread position: 8-287
Cow position: chrX:4123802-4123516 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 159

Conread position: 11-208
Cow position: chrX:2206589-2206784 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 151
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 54, 67

Conread position: 11-287
Cow position: chrX:35387941-35388226 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 26

Conread position: 15-170
Cow position: chrX:27174953-27174787 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 125
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 44, 0

Conread position: 15-207
Cow position: chrX:11938970-11939163 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 156
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 74, 151

Conread position: 15-254
Cow position: chrX:46722777-46723027 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 192
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 45, 161

Conread position: 18-286
Cow position: chrX:45430062-45430336 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 204
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 67, 149

Conread position: 20-275
Cow position: chrX:23061398-23061147 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 190
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 64, 98

Show alignments to all cow chromosomes.