Cow genome map
Conread name: | rlin01_c13r1.y1 |
Conread position: | 1-102 |
Cow position: | chrX:616291-616392 (view UCSC Genome Browser custom track) |
Alignm length: | 103 |
Alignm identity: | 90 |
Alignm E-value: | 1e-25 |
Alignm gaps (pig, cow): | 30, 36 |
Conread position: | 1-102 |
Cow position: | chrX:31252389-31252288 (view UCSC Genome Browser custom track) |
Alignm length: | 103 |
Alignm identity: | 85 |
Alignm E-value: | 7e-21 |
Alignm gaps (pig, cow): | 30, 38 |
Conread position: | 1-144 |
Cow position: | chrX:45759363-45759215 (view UCSC Genome Browser custom track) |
Alignm length: | 150 |
Alignm identity: | 117 |
Alignm E-value: | 1e-25 |
Alignm gaps (pig, cow): | 30, 36 |
Conread position: | 1-146 |
Cow position: | chrX:36067984-36067835 (view UCSC Genome Browser custom track) |
Alignm length: | 154 |
Alignm identity: | 118 |
Alignm E-value: | 8e-23 |
Alignm gaps (pig, cow): | 101, 54 |
Conread position: | 1-170 |
Cow position: | chrX:46429889-46430066 (view UCSC Genome Browser custom track) |
Alignm length: | 180 |
Alignm identity: | 133 |
Alignm E-value: | 3e-25 |
Alignm gaps (pig, cow): | 100, 10 |
Conread position: | 1-201 |
Cow position: | chrX:9201521-9201314 (view UCSC Genome Browser custom track) |
Alignm length: | 216 |
Alignm identity: | 161 |
Alignm E-value: | 3e-25 |
Alignm gaps (pig, cow): | 29, 36 |
Conread position: | 1-208 |
Cow position: | chrX:23514044-23514258 (view UCSC Genome Browser custom track) |
Alignm length: | 222 |
Alignm identity: | 170 |
Alignm E-value: | 9e-35 |
Alignm gaps (pig, cow): | 103, 160 |
Conread position: | 1-208 |
Cow position: | chrX:26875912-26876121 (view UCSC Genome Browser custom track) |
Alignm length: | 219 |
Alignm identity: | 163 |
Alignm E-value: | 5e-29 |
Alignm gaps (pig, cow): | 27, 36 |
Conread position: | 1-208 |
Cow position: | chrX:43567893-43567699 (view UCSC Genome Browser custom track) |
Alignm length: | 209 |
Alignm identity: | 152 |
Alignm E-value: | 1e-26 |
Alignm gaps (pig, cow): | 101, 84 |
Conread position: | 1-287 |
Cow position: | chrX:6414019-6413727 (view UCSC Genome Browser custom track) |
Alignm length: | 299 |
Alignm identity: | 209 |
Alignm E-value: | 3e-35 |
Alignm gaps (pig, cow): | 66, 167 |
Conread position: | 1-287 |
Cow position: | chrX:11656063-11655759 (view UCSC Genome Browser custom track) |
Alignm length: | 309 |
Alignm identity: | 236 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 88, 172 |
Conread position: | 1-287 |
Cow position: | chrX:33855262-33855559 (view UCSC Genome Browser custom track) |
Alignm length: | 305 |
Alignm identity: | 222 |
Alignm E-value: | 1.99965e-42 |
Alignm gaps (pig, cow): | 100, 168 |
Conread position: | 1-291 |
Cow position: | chrX:20801746-20801454 (view UCSC Genome Browser custom track) |
Alignm length: | 301 |
Alignm identity: | 206 |
Alignm E-value: | 6e-31 |
Alignm gaps (pig, cow): | 84, 124 |
Conread position: | 1-291 |
Cow position: | chrX:24424417-24424715 (view UCSC Genome Browser custom track) |
Alignm length: | 301 |
Alignm identity: | 211 |
Alignm E-value: | 5e-40 |
Alignm gaps (pig, cow): | 82, 168 |
Conread position: | 1-291 |
Cow position: | chrX:34401969-34401675 (view UCSC Genome Browser custom track) |
Alignm length: | 302 |
Alignm identity: | 234 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 103, 166 |
Conread position: | 1-291 |
Cow position: | chrX:35224267-35223979 (view UCSC Genome Browser custom track) |
Alignm length: | 301 |
Alignm identity: | 231 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 36 |
Conread position: | 1-294 |
Cow position: | chrX:13785392-13785704 (view UCSC Genome Browser custom track) |
Alignm length: | 315 |
Alignm identity: | 232 |
Alignm E-value: | 2.8026e-45 |
Alignm gaps (pig, cow): | 29, 38 |
Conread position: | 1-294 |
Cow position: | chrX:31436447-31436154 (view UCSC Genome Browser custom track) |
Alignm length: | 300 |
Alignm identity: | 236 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 95, 13 |
Conread position: | 1-294 |
Cow position: | chrX:43115123-43114846 (view UCSC Genome Browser custom track) |
Alignm length: | 296 |
Alignm identity: | 221 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 75, 109 |
Conread position: | 1-315 |
Cow position: | chrX:40557710-40558025 (view UCSC Genome Browser custom track) |
Alignm length: | 323 |
Alignm identity: | 253 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 30, 36 |
Conread position: | 2-137 |
Cow position: | chrX:27145593-27145447 (view UCSC Genome Browser custom track) |
Alignm length: | 148 |
Alignm identity: | 116 |
Alignm E-value: | 8e-23 |
Alignm gaps (pig, cow): | 29, 35 |
Conread position: | 3-170 |
Cow position: | chrX:29509472-29509652 (view UCSC Genome Browser custom track) |
Alignm length: | 181 |
Alignm identity: | 134 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 52, 0 |
Conread position: | 3-204 |
Cow position: | chrX:11589618-11589828 (view UCSC Genome Browser custom track) |
Alignm length: | 214 |
Alignm identity: | 159 |
Alignm E-value: | 2e-30 |
Alignm gaps (pig, cow): | 57, 166 |
Conread position: | 3-206 |
Cow position: | chrX:9635216-9635419 (view UCSC Genome Browser custom track) |
Alignm length: | 214 |
Alignm identity: | 160 |
Alignm E-value: | 1e-27 |
Alignm gaps (pig, cow): | 86, 41 |
Conread position: | 3-217 |
Cow position: | chrX:40116390-40116175 (view UCSC Genome Browser custom track) |
Alignm length: | 226 |
Alignm identity: | 162 |
Alignm E-value: | 1e-25 |
Alignm gaps (pig, cow): | 101, 166 |
Conread position: | 3-227 |
Cow position: | chrX:20151819-20151591 (view UCSC Genome Browser custom track) |
Alignm length: | 235 |
Alignm identity: | 177 |
Alignm E-value: | 1e-37 |
Alignm gaps (pig, cow): | 55, 166 |
Conread position: | 3-245 |
Cow position: | chrX:8925670-8925429 (view UCSC Genome Browser custom track) |
Alignm length: | 249 |
Alignm identity: | 190 |
Alignm E-value: | 2.8026e-45 |
Alignm gaps (pig, cow): | 98, 167 |
Conread position: | 3-245 |
Cow position: | chrX:30922155-30921908 (view UCSC Genome Browser custom track) |
Alignm length: | 258 |
Alignm identity: | 184 |
Alignm E-value: | 1e-26 |
Alignm gaps (pig, cow): | 57, 141 |
Conread position: | 3-245 |
Cow position: | chrX:35413590-35413353 (view UCSC Genome Browser custom track) |
Alignm length: | 246 |
Alignm identity: | 194 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 15, 85 |
Conread position: | 3-284 |
Cow position: | chrX:28845800-28845528 (view UCSC Genome Browser custom track) |
Alignm length: | 286 |
Alignm identity: | 216 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 77 |
Conread position: | 3-290 |
Cow position: | chrX:42247217-42247498 (view UCSC Genome Browser custom track) |
Alignm length: | 297 |
Alignm identity: | 224 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 86, 57 |
Conread position: | 3-291 |
Cow position: | chrX:5017445-5017729 (view UCSC Genome Browser custom track) |
Alignm length: | 293 |
Alignm identity: | 216 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 100, 160 |
Conread position: | 3-291 |
Cow position: | chrX:17498054-17497773 (view UCSC Genome Browser custom track) |
Alignm length: | 289 |
Alignm identity: | 231 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 85, 0 |
Conread position: | 3-291 |
Cow position: | chrX:18694955-18695244 (view UCSC Genome Browser custom track) |
Alignm length: | 296 |
Alignm identity: | 231 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 84, 57 |
Conread position: | 3-291 |
Cow position: | chrX:35681310-35681012 (view UCSC Genome Browser custom track) |
Alignm length: | 305 |
Alignm identity: | 231 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 62, 121 |
Conread position: | 3-291 |
Cow position: | chrX:38439447-38439151 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 233 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 97, 176 |
Conread position: | 3-291 |
Cow position: | chrX:42461775-42462071 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 224 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 82, 168 |
Conread position: | 3-291 |
Cow position: | chrX:44396987-44396697 (view UCSC Genome Browser custom track) |
Alignm length: | 305 |
Alignm identity: | 210 |
Alignm E-value: | 3e-25 |
Alignm gaps (pig, cow): | 95, 55 |
Conread position: | 4-291 |
Cow position: | chrX:7571871-7571583 (view UCSC Genome Browser custom track) |
Alignm length: | 296 |
Alignm identity: | 227 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 97, 57 |
Conread position: | 5-287 |
Cow position: | chrX:40826784-40827066 (view UCSC Genome Browser custom track) |
Alignm length: | 289 |
Alignm identity: | 210 |
Alignm E-value: | 2.8026e-45 |
Alignm gaps (pig, cow): | 55, 155 |
Conread position: | 5-288 |
Cow position: | chrX:14924968-14924680 (view UCSC Genome Browser custom track) |
Alignm length: | 296 |
Alignm identity: | 221 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 58, 151 |
Conread position: | 5-291 |
Cow position: | chrX:12116013-12115718 (view UCSC Genome Browser custom track) |
Alignm length: | 305 |
Alignm identity: | 216 |
Alignm E-value: | 3e-34 |
Alignm gaps (pig, cow): | 58, 168 |
Conread position: | 5-291 |
Cow position: | chrX:23563823-23564120 (view UCSC Genome Browser custom track) |
Alignm length: | 304 |
Alignm identity: | 224 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 54, 171 |
Conread position: | 5-291 |
Cow position: | chrX:48287482-48287763 (view UCSC Genome Browser custom track) |
Alignm length: | 292 |
Alignm identity: | 209 |
Alignm E-value: | 1e-38 |
Alignm gaps (pig, cow): | 84, 116 |
Conread position: | 8-287 |
Cow position: | chrX:4123802-4123516 (view UCSC Genome Browser custom track) |
Alignm length: | 293 |
Alignm identity: | 228 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 159 |
Conread position: | 11-208 |
Cow position: | chrX:2206589-2206784 (view UCSC Genome Browser custom track) |
Alignm length: | 203 |
Alignm identity: | 151 |
Alignm E-value: | 6e-30 |
Alignm gaps (pig, cow): | 54, 67 |
Conread position: | 11-287 |
Cow position: | chrX:35387941-35388226 (view UCSC Genome Browser custom track) |
Alignm length: | 292 |
Alignm identity: | 227 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 26 |
Conread position: | 15-170 |
Cow position: | chrX:27174953-27174787 (view UCSC Genome Browser custom track) |
Alignm length: | 167 |
Alignm identity: | 125 |
Alignm E-value: | 3e-24 |
Alignm gaps (pig, cow): | 44, 0 |
Conread position: | 15-207 |
Cow position: | chrX:11938970-11939163 (view UCSC Genome Browser custom track) |
Alignm length: | 203 |
Alignm identity: | 156 |
Alignm E-value: | 2e-30 |
Alignm gaps (pig, cow): | 74, 151 |
Conread position: | 15-254 |
Cow position: | chrX:46722777-46723027 (view UCSC Genome Browser custom track) |
Alignm length: | 257 |
Alignm identity: | 192 |
Alignm E-value: | 4e-38 |
Alignm gaps (pig, cow): | 45, 161 |
Conread position: | 18-286 |
Cow position: | chrX:45430062-45430336 (view UCSC Genome Browser custom track) |
Alignm length: | 281 |
Alignm identity: | 204 |
Alignm E-value: | 2e-39 |
Alignm gaps (pig, cow): | 67, 149 |
Conread position: | 20-275 |
Cow position: | chrX:23061398-23061147 (view UCSC Genome Browser custom track) |
Alignm length: | 260 |
Alignm identity: | 190 |
Alignm E-value: | 5e-40 |
Alignm gaps (pig, cow): | 64, 98 |
Show alignments to all cow chromosomes.