Cow genome map
| Conread name: | rlin28_k10.y1 |
| Conread position: | 1-218 |
| Cow position: | chr11:13794253-13794473 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 125, 101 |
| Conread position: | 1-401 |
| Cow position: | chr11:7228672-7228258 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 123, 346 |
| Conread position: | 1-401 |
| Cow position: | chr11:38833054-38833468 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 123, 346 |
| Conread position: | 1-401 |
| Cow position: | chr11:41168276-41168693 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 1-401 |
| Cow position: | chr11:44580811-44581226 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 120, 347 |
| Conread position: | 1-401 |
| Cow position: | chr11:53429603-53430020 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 284 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 111, 106 |
| Conread position: | 1-404 |
| Cow position: | chr11:72312875-72312455 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 120, 323 |
| Conread position: | 2-342 |
| Cow position: | chr11:17938553-17938901 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 238 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 113, 40 |
| Conread position: | 2-419 |
| Cow position: | chr11:19100066-19100498 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 286 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 124, 188 |
| Conread position: | 3-359 |
| Cow position: | chr11:28227363-28227733 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 111, 168 |
| Conread position: | 3-369 |
| Cow position: | chr11:19061658-19062040 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 257 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 3-374 |
| Cow position: | chr11:35142906-35143295 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 255 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 3-376 |
| Cow position: | chr11:12950749-12951119 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 153, 175 |
| Conread position: | 3-376 |
| Cow position: | chr11:32478396-32478785 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 263 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 37, 29 |
| Conread position: | 3-391 |
| Cow position: | chr11:35862211-35862616 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 37, 169 |
| Conread position: | 3-391 |
| Cow position: | chr11:40403344-40403739 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 267 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 32, 14 |
| Conread position: | 3-391 |
| Cow position: | chr11:49172084-49172487 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 268 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 29, 42 |
| Conread position: | 3-404 |
| Cow position: | chr11:81338970-81339385 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 282 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 33, 14 |
| Conread position: | 3-418 |
| Cow position: | chr11:84966530-84966102 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 3-419 |
| Cow position: | chr11:418313-418737 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 289 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 110, 64 |
| Conread position: | 3-419 |
| Cow position: | chr11:9732258-9732688 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 278 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 110, 344 |
| Conread position: | 3-419 |
| Cow position: | chr11:15987669-15987240 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 283 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 3-419 |
| Cow position: | chr11:38600521-38600948 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 283 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 110, 168 |
| Conread position: | 3-419 |
| Cow position: | chr11:63391060-63391492 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 286 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 110, 64 |
| Conread position: | 3-419 |
| Cow position: | chr11:67445825-67446256 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 279 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 110, 187 |
| Conread position: | 3-419 |
| Cow position: | chr11:67453071-67452638 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 278 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 5-391 |
| Cow position: | chr11:27725486-27725881 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 108, 287 |
| Conread position: | 5-419 |
| Cow position: | chr11:8265944-8265505 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 288 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 98, 336 |
| Conread position: | 5-422 |
| Cow position: | chr11:20731808-20732238 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 342 |
| Conread position: | 7-358 |
| Cow position: | chr11:10958233-10957866 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 239 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 18-239 |
| Cow position: | chr11:37438358-37438135 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 17, 129 |
| Conread position: | 18-391 |
| Cow position: | chr11:85391422-85391812 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 261 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 94, 89 |
| Conread position: | 18-423 |
| Cow position: | chr11:44254478-44254063 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 280 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 11, 92 |
| Conread position: | 20-419 |
| Cow position: | chr11:52845938-52845528 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 129 |
| Conread position: | 22-419 |
| Cow position: | chr11:9387431-9387831 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 260 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 102, 203 |
| Conread position: | 24-375 |
| Cow position: | chr11:48788309-48788668 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 17, 81 |
| Conread position: | 25-392 |
| Cow position: | chr11:4884581-4884947 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 44 |
| Conread position: | 27-356 |
| Cow position: | chr11:9576902-9577229 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 230 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 30, 5 |
| Conread position: | 29-393 |
| Cow position: | chr11:9248847-9249215 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 11, 92 |
| Conread position: | 33-220 |
| Cow position: | chr11:5261975-5262170 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 33-344 |
| Cow position: | chr11:3881899-3882208 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 80, 103 |
| Conread position: | 34-419 |
| Cow position: | chr11:25790967-25791362 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 344 |
| Conread position: | 34-421 |
| Cow position: | chr11:6079215-6078813 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 282 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 50, 54 |
| Conread position: | 39-365 |
| Cow position: | chr11:44154706-44155046 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 59, 309 |
| Conread position: | 39-391 |
| Cow position: | chr11:15127195-15126829 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 85, 231 |
| Conread position: | 41-419 |
| Cow position: | chr11:30201311-30201701 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 271 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 72, 130 |
| Conread position: | 42-401 |
| Cow position: | chr11:83304933-83304584 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 246 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 146, 73 |
| Conread position: | 45-407 |
| Cow position: | chr11:21010033-21010396 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 82, 41 |
| Conread position: | 50-408 |
| Cow position: | chr11:46682832-46682463 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 79, 7 |
| Conread position: | 69-371 |
| Cow position: | chr11:85209058-85209384 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 240 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 63, 153 |
Show alignments to all cow chromosomes.