Cow genome map
| Conread name: | rlin28_k10.y1 |
| Conread position: | 1-344 |
| Cow position: | chr15:46551719-46552086 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 260 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1-366 |
| Cow position: | chr15:2078996-2078624 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 245 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 123, 97 |
| Conread position: | 1-401 |
| Cow position: | chr15:7270708-7270297 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 271 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 125, 95 |
| Conread position: | 1-401 |
| Cow position: | chr15:14579778-14580195 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 1-401 |
| Cow position: | chr15:20412962-20412550 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 278 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 120, 86 |
| Conread position: | 1-401 |
| Cow position: | chr15:21663375-21663790 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 274 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 123, 347 |
| Conread position: | 1-401 |
| Cow position: | chr15:24297561-24297145 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 120, 76 |
| Conread position: | 1-401 |
| Cow position: | chr15:27748377-27747961 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 279 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 123, 289 |
| Conread position: | 1-401 |
| Cow position: | chr15:51220108-51219693 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 276 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 123, 91 |
| Conread position: | 1-412 |
| Cow position: | chr15:7310267-7309834 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 18 |
| Conread position: | 1-419 |
| Cow position: | chr15:42532288-42531854 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 286 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 1-420 |
| Cow position: | chr15:42939278-42938840 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 291 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 123, 148 |
| Conread position: | 1-423 |
| Cow position: | chr15:4727574-4727137 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 291 |
| Conread position: | 1-425 |
| Cow position: | chr15:12418343-12418780 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 284 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 123, 71 |
| Conread position: | 1-425 |
| Cow position: | chr15:28468798-28468358 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 12 |
| Conread position: | 3-312 |
| Cow position: | chr15:22540452-22540777 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 3-370 |
| Cow position: | chr15:36941021-36941402 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 110, 331 |
| Conread position: | 3-373 |
| Cow position: | chr15:443423-443804 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 255 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 110, 74 |
| Conread position: | 3-391 |
| Cow position: | chr15:4673611-4673206 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 260 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 95, 106 |
| Conread position: | 3-391 |
| Cow position: | chr15:10825838-10825434 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 279 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 75, 221 |
| Conread position: | 3-391 |
| Cow position: | chr15:42944242-42944645 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 274 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 37, 29 |
| Conread position: | 3-419 |
| Cow position: | chr15:3153198-3153616 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 278 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 110, 311 |
| Conread position: | 3-419 |
| Cow position: | chr15:7565368-7564937 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 284 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 110, 291 |
| Conread position: | 3-419 |
| Cow position: | chr15:20405371-20405802 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 287 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 110, 291 |
| Conread position: | 3-419 |
| Cow position: | chr15:25132321-25131888 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 279 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 3-419 |
| Cow position: | chr15:28487762-28488190 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 280 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 110, 64 |
| Conread position: | 3-422 |
| Cow position: | chr15:480949-480513 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 284 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 110, 347 |
| Conread position: | 3-422 |
| Cow position: | chr15:5939302-5939731 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 287 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 105, 319 |
| Conread position: | 3-423 |
| Cow position: | chr15:36330093-36330528 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 289 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 110, 168 |
| Conread position: | 6-392 |
| Cow position: | chr15:27078516-27078898 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 251, 145 |
| Conread position: | 17-404 |
| Cow position: | chr15:7552974-7552573 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 18, 55 |
| Conread position: | 18-274 |
| Cow position: | chr15:313452-313714 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 103, 13 |
| Conread position: | 18-422 |
| Cow position: | chr15:13538531-13538930 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 11 |
| Conread position: | 20-391 |
| Cow position: | chr15:2014846-2014468 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 260 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 93, 11 |
| Conread position: | 20-391 |
| Cow position: | chr15:3891915-3891527 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 261 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 20-392 |
| Cow position: | chr15:15344755-15345144 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 258 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 20-401 |
| Cow position: | chr15:5982993-5982600 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 256 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 104, 129 |
| Conread position: | 20-419 |
| Cow position: | chr15:18265413-18265826 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 277 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 105, 327 |
| Conread position: | 20-419 |
| Cow position: | chr15:21533782-21534189 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 256 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 100, 352 |
| Conread position: | 20-419 |
| Cow position: | chr15:32065905-32066316 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 266 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 37, 251 |
| Conread position: | 20-422 |
| Cow position: | chr15:8101806-8101385 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 274 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 104, 230 |
| Conread position: | 25-401 |
| Cow position: | chr15:4388094-4387706 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 257 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 101, 124 |
| Conread position: | 39-391 |
| Cow position: | chr15:6119740-6119374 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 39-419 |
| Cow position: | chr15:20457381-20456989 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 259 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 85, 53 |
| Conread position: | 55-419 |
| Cow position: | chr15:5009322-5009701 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 249 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 58, 116 |
| Conread position: | 55-423 |
| Cow position: | chr15:21805300-21804917 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 213 |
| Conread position: | 60-421 |
| Cow position: | chr15:33640070-33640446 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 63 |
Show alignments to all cow chromosomes.