Cow genome map
| Conread name: | rlin28_k10.y1 |
| Conread position: | 1-391 |
| Cow position: | chr16:52526251-52525847 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 270 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 124, 346 |
| Conread position: | 1-392 |
| Cow position: | chr16:25343995-25343588 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 268 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 125, 64 |
| Conread position: | 1-401 |
| Cow position: | chr16:1565657-1566065 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 278 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 109, 105 |
| Conread position: | 1-401 |
| Cow position: | chr16:2408875-2409285 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 274 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 123, 189 |
| Conread position: | 1-401 |
| Cow position: | chr16:3144379-3144786 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 269 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 123, 148 |
| Conread position: | 1-401 |
| Cow position: | chr16:3149011-3149418 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 271 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 123, 148 |
| Conread position: | 1-401 |
| Cow position: | chr16:15980366-15980779 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 123, 325 |
| Conread position: | 1-413 |
| Cow position: | chr16:45800785-45800364 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 61 |
| Conread position: | 1-419 |
| Cow position: | chr16:4426111-4425680 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 280 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 120, 13 |
| Conread position: | 1-419 |
| Cow position: | chr16:25455443-25455873 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 284 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 125, 50 |
| Conread position: | 1-419 |
| Cow position: | chr16:28194280-28194715 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 1-419 |
| Cow position: | chr16:37478841-37479266 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 285 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 123, 248 |
| Conread position: | 1-419 |
| Cow position: | chr16:54323300-54323735 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 287 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 109, 105 |
| Conread position: | 1-420 |
| Cow position: | chr16:23719378-23719804 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 291 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 114, 55 |
| Conread position: | 1-423 |
| Cow position: | chr16:23464922-23464479 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 41 |
| Conread position: | 1-425 |
| Cow position: | chr16:7674440-7674880 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 295 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 123, 59 |
| Conread position: | 1-425 |
| Cow position: | chr16:42059002-42058565 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 15 |
| Conread position: | 3-305 |
| Cow position: | chr16:15812086-15811769 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 3-376 |
| Cow position: | chr16:4388755-4388365 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 262 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 3-389 |
| Cow position: | chr16:34505715-34505315 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 258 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 121, 344 |
| Conread position: | 3-391 |
| Cow position: | chr16:5526088-5526489 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 262 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 3-391 |
| Cow position: | chr16:23364894-23365294 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 258 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 123, 185 |
| Conread position: | 3-412 |
| Cow position: | chr16:3010853-3010436 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 146 |
| Conread position: | 3-418 |
| Cow position: | chr16:47403401-47402972 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 344 |
| Conread position: | 3-419 |
| Cow position: | chr16:22799652-22800085 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 283 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 3-419 |
| Cow position: | chr16:24621680-24622110 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 286 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 37, 29 |
| Conread position: | 3-419 |
| Cow position: | chr16:26990930-26991363 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 289 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 110, 325 |
| Conread position: | 3-419 |
| Cow position: | chr16:41161452-41161879 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 3-419 |
| Cow position: | chr16:51086800-51086371 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 277 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 116, 168 |
| Conread position: | 4-419 |
| Cow position: | chr16:21189251-21188819 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 285 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 36, 32 |
| Conread position: | 17-401 |
| Cow position: | chr16:5487777-5487372 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 268 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 13, 274 |
| Conread position: | 18-389 |
| Cow position: | chr16:2481113-2481500 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 254 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 12, 329 |
| Conread position: | 18-391 |
| Cow position: | chr16:2725218-2725606 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 257 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 106, 11 |
| Conread position: | 18-391 |
| Cow position: | chr16:27731377-27731766 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 12, 331 |
| Conread position: | 18-392 |
| Cow position: | chr16:26665721-26665342 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 12, 300 |
| Conread position: | 18-401 |
| Cow position: | chr16:7466618-7466216 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 267 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 18-401 |
| Cow position: | chr16:8814096-8814501 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 18-418 |
| Cow position: | chr16:52474015-52474401 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 279 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 13, 72 |
| Conread position: | 18-419 |
| Cow position: | chr16:839288-838874 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 278 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 12, 332 |
| Conread position: | 18-423 |
| Cow position: | chr16:10440245-10439830 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 286 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 12, 52 |
| Conread position: | 20-389 |
| Cow position: | chr16:31586696-31587081 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 104, 270 |
| Conread position: | 20-391 |
| Cow position: | chr16:42734628-42734997 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 99, 9 |
| Conread position: | 20-392 |
| Cow position: | chr16:41033303-41032915 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 21-419 |
| Cow position: | chr16:25087609-25087202 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 96, 198 |
| Conread position: | 22-398 |
| Cow position: | chr16:10825992-10826367 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 36 |
| Conread position: | 23-382 |
| Cow position: | chr16:23097197-23097569 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 26-419 |
| Cow position: | chr16:34526-34130 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 264 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 14, 110 |
| Conread position: | 32-374 |
| Cow position: | chr16:37443530-37443886 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 8, 254 |
| Conread position: | 35-423 |
| Cow position: | chr16:29739097-29739496 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 13 |
| Conread position: | 39-419 |
| Cow position: | chr16:5655149-5654767 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 249 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 93, 39 |
| Conread position: | 39-424 |
| Cow position: | chr16:26653656-26653258 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 96, 32 |
| Conread position: | 41-389 |
| Cow position: | chr16:625351-624996 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 242 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 83, 168 |
| Conread position: | 42-389 |
| Cow position: | chr16:22852981-22852619 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 263 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 73, 160 |
| Conread position: | 42-401 |
| Cow position: | chr16:30073365-30072994 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 250 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 84, 61 |
| Conread position: | 42-419 |
| Cow position: | chr16:42162722-42162333 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 53-262 |
| Cow position: | chr16:26423970-26424188 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 62, 31 |
Show alignments to all cow chromosomes.