Cow genome map
| Conread name: | rlin28_k10.y1 |
| Conread position: | 1-391 |
| Cow position: | chr2:21982505-21982905 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 123, 148 |
| Conread position: | 1-392 |
| Cow position: | chr2:12478010-12478415 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 271 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 95, 291 |
| Conread position: | 1-401 |
| Cow position: | chr2:4931937-4932348 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 270 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 120, 346 |
| Conread position: | 1-401 |
| Cow position: | chr2:42668454-42668864 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 273 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 93, 108 |
| Conread position: | 1-401 |
| Cow position: | chr2:44477862-44477449 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 280 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 123, 107 |
| Conread position: | 1-401 |
| Cow position: | chr2:50079815-50079401 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 272 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 125, 346 |
| Conread position: | 1-401 |
| Cow position: | chr2:50980902-50981309 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 278 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 123, 16 |
| Conread position: | 1-406 |
| Cow position: | chr2:13067751-13068163 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 110, 106 |
| Conread position: | 1-412 |
| Cow position: | chr2:49307028-49306619 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 283 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 115, 18 |
| Conread position: | 1-419 |
| Cow position: | chr2:7328196-7327776 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 311 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 121, 18 |
| Conread position: | 1-419 |
| Cow position: | chr2:19013610-19013179 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 130, 95 |
| Conread position: | 1-419 |
| Cow position: | chr2:49463169-49462739 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 285 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 16, 123 |
| Conread position: | 1-419 |
| Cow position: | chr2:53003949-53004380 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 278 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 1-422 |
| Cow position: | chr2:10467851-10467417 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 286 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 123, 345 |
| Conread position: | 1-422 |
| Cow position: | chr2:24927666-24927231 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 282 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 123, 346 |
| Conread position: | 1-422 |
| Cow position: | chr2:46183282-46183720 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 280 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 1-425 |
| Cow position: | chr2:10183976-10184413 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 284 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 120, 210 |
| Conread position: | 1-425 |
| Cow position: | chr2:41782881-41782459 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 290 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 99, 247 |
| Conread position: | 1-429 |
| Cow position: | chr2:28796097-28795652 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 288 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 111, 106 |
| Conread position: | 2-419 |
| Cow position: | chr2:54900347-54899946 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 291 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 102, 40 |
| Conread position: | 3-322 |
| Cow position: | chr2:4401164-4401494 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 3-376 |
| Cow position: | chr2:4180864-4181253 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 256 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 3-376 |
| Cow position: | chr2:4834352-4834737 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 260 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 37, 29 |
| Conread position: | 3-391 |
| Cow position: | chr2:9910244-9909839 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 272 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 3-391 |
| Cow position: | chr2:9956820-9957221 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 265 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 3-391 |
| Cow position: | chr2:9962820-9963221 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 265 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 3-391 |
| Cow position: | chr2:33081512-33081903 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 29, 40 |
| Conread position: | 3-391 |
| Cow position: | chr2:39424181-39423778 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 271 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 110, 43 |
| Conread position: | 3-406 |
| Cow position: | chr2:31408095-31408511 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 275 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 37, 29 |
| Conread position: | 3-407 |
| Cow position: | chr2:10880340-10879930 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 14 |
| Conread position: | 3-417 |
| Cow position: | chr2:44093617-44093195 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 285 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 110, 168 |
| Conread position: | 3-418 |
| Cow position: | chr2:14208584-14209010 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 285 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 110, 168 |
| Conread position: | 3-419 |
| Cow position: | chr2:2182019-2182448 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 283 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 116, 39 |
| Conread position: | 3-419 |
| Cow position: | chr2:3622772-3622345 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 279 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 3-419 |
| Cow position: | chr2:6004583-6005016 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 167 |
| Conread position: | 3-419 |
| Cow position: | chr2:24687929-24687504 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 283 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 110, 379 |
| Conread position: | 3-419 |
| Cow position: | chr2:43757389-43757820 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 283 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 110, 146 |
| Conread position: | 3-419 |
| Cow position: | chr2:45937472-45937891 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 264 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 116, 315 |
| Conread position: | 3-419 |
| Cow position: | chr2:48850996-48851429 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 288 |
| Conread position: | 3-419 |
| Cow position: | chr2:49629576-49629144 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 289 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 110, 74 |
| Conread position: | 3-419 |
| Cow position: | chr2:53542188-53541759 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 280 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 3-419 |
| Cow position: | chr2:54739734-54739305 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 280 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 3-419 |
| Cow position: | chr2:57338210-57337777 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 289 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 37, 29 |
| Conread position: | 3-419 |
| Cow position: | chr2:57937648-57937217 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 284 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 110, 183 |
| Conread position: | 3-419 |
| Cow position: | chr2:62730776-62730343 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 287 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 3-422 |
| Cow position: | chr2:4452621-4452185 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 4-392 |
| Cow position: | chr2:28647368-28647770 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 120, 343 |
| Conread position: | 5-391 |
| Cow position: | chr2:39676513-39676913 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 265 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 119, 349 |
| Conread position: | 5-401 |
| Cow position: | chr2:25886306-25886713 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 271 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 119, 286 |
| Conread position: | 5-419 |
| Cow position: | chr2:7369922-7369498 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 282 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 119, 103 |
| Conread position: | 18-401 |
| Cow position: | chr2:974135-974533 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 12, 331 |
| Conread position: | 18-401 |
| Cow position: | chr2:8120939-8120539 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 267 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 106, 12 |
| Conread position: | 18-419 |
| Cow position: | chr2:2602914-2602508 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 268 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 12, 180 |
| Conread position: | 18-419 |
| Cow position: | chr2:12222045-12222459 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 276 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 106, 232 |
| Conread position: | 18-419 |
| Cow position: | chr2:12595215-12594795 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 285 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 12, 136 |
| Conread position: | 18-419 |
| Cow position: | chr2:72931844-72932267 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 286 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 12, 268 |
| Conread position: | 20-344 |
| Cow position: | chr2:74470089-74469757 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 228 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 93, 17 |
| Conread position: | 20-391 |
| Cow position: | chr2:9187829-9188205 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 82, 306 |
| Conread position: | 20-391 |
| Cow position: | chr2:72791340-72791726 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 254 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 12, 23 |
| Conread position: | 20-401 |
| Cow position: | chr2:5868073-5868468 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 266 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 11, 21 |
| Conread position: | 20-401 |
| Cow position: | chr2:53332037-53331639 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 265 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 23-391 |
| Cow position: | chr2:49301784-49302167 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 90, 325 |
| Conread position: | 23-419 |
| Cow position: | chr2:25023330-25022916 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 262 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 33-372 |
| Cow position: | chr2:44057812-44058161 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 80, 116 |
| Conread position: | 33-411 |
| Cow position: | chr2:14070197-14070594 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 146 |
| Conread position: | 39-301 |
| Cow position: | chr2:16327697-16327974 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 39-420 |
| Cow position: | chr2:54695852-54695457 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 85, 310 |
| Conread position: | 40-351 |
| Cow position: | chr2:851034-851361 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 69, 171 |
| Conread position: | 43-242 |
| Cow position: | chr2:5908703-5908499 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 56, 0 |
Show alignments to all cow chromosomes.