Cow genome map
| Conread name: | rlin28_k10.y1 |
| Conread position: | 1-302 |
| Cow position: | chr29:5240111-5239798 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 120, 289 |
| Conread position: | 1-383 |
| Cow position: | chr29:32542855-32542473 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 262 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 123, 107 |
| Conread position: | 1-391 |
| Cow position: | chr29:2838617-2839024 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 262 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 1-392 |
| Cow position: | chr29:2693165-2692764 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 120, 148 |
| Conread position: | 1-401 |
| Cow position: | chr29:45741-46153 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 273 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 120, 189 |
| Conread position: | 1-401 |
| Cow position: | chr29:529680-530094 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 276 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 123, 331 |
| Conread position: | 1-401 |
| Cow position: | chr29:8624477-8624887 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 272 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 123, 148 |
| Conread position: | 1-401 |
| Cow position: | chr29:35274304-35274717 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 274 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 1-404 |
| Cow position: | chr29:45207230-45206815 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 282 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 123, 97 |
| Conread position: | 1-419 |
| Cow position: | chr29:2464152-2464586 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 283 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 1-419 |
| Cow position: | chr29:13019404-13018980 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 284 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 120, 98 |
| Conread position: | 1-419 |
| Cow position: | chr29:16728970-16729401 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 295 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 99, 31 |
| Conread position: | 1-421 |
| Cow position: | chr29:5399009-5398583 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 15 |
| Conread position: | 1-423 |
| Cow position: | chr29:408543-408975 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 280 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 123, 342 |
| Conread position: | 1-423 |
| Cow position: | chr29:26162117-26162555 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 289 |
| Conread position: | 1-423 |
| Cow position: | chr29:37042887-37043318 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 98 |
| Conread position: | 1-423 |
| Cow position: | chr29:39076997-39077431 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 286 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 120, 344 |
| Conread position: | 1-423 |
| Cow position: | chr29:40500269-40500730 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 295 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 1-426 |
| Cow position: | chr29:45461952-45461511 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 293 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 123, 284 |
| Conread position: | 3-298 |
| Cow position: | chr29:1478169-1477859 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 3-364 |
| Cow position: | chr29:31764757-31764382 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 110, 43 |
| Conread position: | 3-370 |
| Cow position: | chr29:27977109-27977486 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 248 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 37, 29 |
| Conread position: | 3-396 |
| Cow position: | chr29:32515042-32514635 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 203 |
| Conread position: | 3-401 |
| Cow position: | chr29:13584933-13584524 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 271 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 110, 167 |
| Conread position: | 3-419 |
| Cow position: | chr29:607915-608343 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 283 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 50, 367 |
| Conread position: | 3-419 |
| Cow position: | chr29:666690-667123 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 287 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 37, 29 |
| Conread position: | 3-419 |
| Cow position: | chr29:7847108-7846679 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 277 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 37, 29 |
| Conread position: | 3-419 |
| Cow position: | chr29:15966836-15967269 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 287 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 37, 29 |
| Conread position: | 3-419 |
| Cow position: | chr29:16171395-16171822 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 279 |
| Conread position: | 3-419 |
| Cow position: | chr29:28657653-28658085 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 3-419 |
| Cow position: | chr29:35299637-35299210 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 281 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 110, 352 |
| Conread position: | 8-394 |
| Cow position: | chr29:132233-131833 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 27, 300 |
| Conread position: | 17-422 |
| Cow position: | chr29:29702668-29703085 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 272 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 18, 224 |
| Conread position: | 18-391 |
| Cow position: | chr29:19656604-19656216 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 259 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 103, 12 |
| Conread position: | 18-395 |
| Cow position: | chr29:16346910-16346514 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 262 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 18-401 |
| Cow position: | chr29:20253874-20253477 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 264 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 12, 199 |
| Conread position: | 18-401 |
| Cow position: | chr29:23979415-23979011 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 267 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 18-401 |
| Cow position: | chr29:39048889-39049276 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 37 |
| Conread position: | 18-419 |
| Cow position: | chr29:7428411-7428828 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 278 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 18-419 |
| Cow position: | chr29:43326204-43325799 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 282 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 12, 211 |
| Conread position: | 18-421 |
| Cow position: | chr29:4200096-4199687 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 286 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 12, 52 |
| Conread position: | 20-389 |
| Cow position: | chr29:6934191-6933811 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 97, 261 |
| Conread position: | 20-419 |
| Cow position: | chr29:15623998-15624418 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 282 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 20-419 |
| Cow position: | chr29:19890273-19889864 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 272 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 96, 129 |
| Conread position: | 39-419 |
| Cow position: | chr29:10821235-10821632 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 265 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 85, 252 |
Show alignments to all cow chromosomes.