Cow genome map
| Conread name: | rlin28_k10.y1 |
| Conread position: | 1-388 |
| Cow position: | chr3:53518230-53517829 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 123, 339 |
| Conread position: | 1-401 |
| Cow position: | chr3:43190637-43191054 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 273 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 1-418 |
| Cow position: | chr3:68718073-68718507 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 285 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 1-419 |
| Cow position: | chr3:59864188-59863766 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 123, 286 |
| Conread position: | 1-419 |
| Cow position: | chr3:75039212-75039649 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 285 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 123, 287 |
| Conread position: | 1-420 |
| Cow position: | chr3:22725136-22725570 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 123, 345 |
| Conread position: | 1-423 |
| Cow position: | chr3:46686586-46687012 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 41 |
| Conread position: | 1-423 |
| Cow position: | chr3:54358121-54358540 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 153 |
| Conread position: | 2-401 |
| Cow position: | chr3:23287703-23288116 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 271 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 36, 42 |
| Conread position: | 2-419 |
| Cow position: | chr3:32620409-32620843 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 283 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 2-421 |
| Cow position: | chr3:61628157-61627735 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 14 |
| Conread position: | 3-331 |
| Cow position: | chr3:24264833-24264489 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 3-352 |
| Cow position: | chr3:6382869-6382503 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 244 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 62, 289 |
| Conread position: | 3-352 |
| Cow position: | chr3:19883107-19882742 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 110, 168 |
| Conread position: | 3-362 |
| Cow position: | chr3:14452290-14451916 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 117, 303 |
| Conread position: | 3-391 |
| Cow position: | chr3:30616306-30616710 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 168 |
| Conread position: | 3-391 |
| Cow position: | chr3:48845637-48845229 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 270 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 3-391 |
| Cow position: | chr3:49563641-49563236 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 277 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 37, 29 |
| Conread position: | 3-418 |
| Cow position: | chr3:35611785-35611363 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 281 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 110, 262 |
| Conread position: | 3-418 |
| Cow position: | chr3:40337512-40337940 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 280 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 3-418 |
| Cow position: | chr3:68697336-68697768 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 3-419 |
| Cow position: | chr3:7156084-7156512 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 110, 146 |
| Conread position: | 3-419 |
| Cow position: | chr3:7246472-7246906 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 289 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 115, 348 |
| Conread position: | 3-419 |
| Cow position: | chr3:18113056-18113488 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 296 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 87, 64 |
| Conread position: | 3-419 |
| Cow position: | chr3:18862074-18861641 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 288 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 3-419 |
| Cow position: | chr3:19798521-19798954 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 168 |
| Conread position: | 3-419 |
| Cow position: | chr3:20380086-20380525 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 291 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 110, 216 |
| Conread position: | 3-419 |
| Cow position: | chr3:26743240-26743673 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 285 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 33, 39 |
| Conread position: | 3-419 |
| Cow position: | chr3:29328651-29329084 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 285 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 3-419 |
| Cow position: | chr3:29574489-29574915 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 284 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 110, 288 |
| Conread position: | 3-419 |
| Cow position: | chr3:31021314-31020881 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 284 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 37, 29 |
| Conread position: | 3-419 |
| Cow position: | chr3:37971675-37971253 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 282 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 111, 89 |
| Conread position: | 3-419 |
| Cow position: | chr3:41207965-41208397 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 287 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 110, 70 |
| Conread position: | 3-419 |
| Cow position: | chr3:49908381-49908814 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 3-419 |
| Cow position: | chr3:66969249-66969681 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 3-422 |
| Cow position: | chr3:67532787-67532357 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 288 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 103, 339 |
| Conread position: | 4-387 |
| Cow position: | chr3:58103217-58102825 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 281 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 141, 69 |
| Conread position: | 5-401 |
| Cow position: | chr3:78024803-78025216 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 272 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 5-424 |
| Cow position: | chr3:31121515-31121949 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 280 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 119, 235 |
| Conread position: | 14-419 |
| Cow position: | chr3:76839602-76839208 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 269 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 126, 75 |
| Conread position: | 17-245 |
| Cow position: | chr3:2477134-2477365 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 18, 135 |
| Conread position: | 18-391 |
| Cow position: | chr3:69931215-69931607 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 18-401 |
| Cow position: | chr3:19754342-19754738 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 12, 332 |
| Conread position: | 18-401 |
| Cow position: | chr3:24443476-24443878 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 20-419 |
| Cow position: | chr3:46858670-46859086 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 278 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 20-419 |
| Cow position: | chr3:57455602-57455207 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 78, 88 |
| Conread position: | 23-391 |
| Cow position: | chr3:45977114-45976729 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 262 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 57, 269 |
| Conread position: | 23-401 |
| Cow position: | chr3:596732-596350 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 101, 126 |
| Conread position: | 24-419 |
| Cow position: | chr3:6785018-6784608 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 275 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 89, 211 |
| Conread position: | 33-391 |
| Cow position: | chr3:34028323-34028696 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 243 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 91, 328 |
| Conread position: | 33-418 |
| Cow position: | chr3:29129692-29129297 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 260 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 80, 74 |
| Conread position: | 33-419 |
| Cow position: | chr3:40208882-40209272 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 270 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 101, 24 |
| Conread position: | 39-419 |
| Cow position: | chr3:56328721-56328323 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 39-421 |
| Cow position: | chr3:43482377-43481987 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 37 |
| Conread position: | 41-201 |
| Cow position: | chr3:48995392-48995221 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 42-419 |
| Cow position: | chr3:74060069-74059675 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 267 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 71, 129 |
| Conread position: | 45-419 |
| Cow position: | chr3:3790221-3789838 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 76, 139 |
| Conread position: | 53-405 |
| Cow position: | chr3:19075506-19075148 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 249 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 88, 65 |
| Conread position: | 70-389 |
| Cow position: | chr3:84962698-84962369 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 63, 197 |
| Conread position: | 284-421 |
| Cow position: | chr3:19831453-19831590 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 56, 82 |
Show alignments to all cow chromosomes.