Cow genome map
| Conread name: | rlin28_k10.y1 |
| Conread position: | 1-223 |
| Cow position: | chr4:1308681-1308446 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 1-334 |
| Cow position: | chr4:54195687-54195350 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 96, 28 |
| Conread position: | 1-385 |
| Cow position: | chr4:25348842-25348450 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 66 |
| Conread position: | 1-391 |
| Cow position: | chr4:358322-357926 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 265 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 123, 346 |
| Conread position: | 1-391 |
| Cow position: | chr4:48029300-48028896 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 123, 346 |
| Conread position: | 1-401 |
| Cow position: | chr4:3449234-3448814 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 274 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 123, 222 |
| Conread position: | 1-401 |
| Cow position: | chr4:4378830-4378413 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 276 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 123, 67 |
| Conread position: | 1-401 |
| Cow position: | chr4:61241720-61241309 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 120, 148 |
| Conread position: | 1-401 |
| Cow position: | chr4:67382725-67382314 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 275 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 112, 182 |
| Conread position: | 1-403 |
| Cow position: | chr4:43883552-43883136 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 273 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 123, 39 |
| Conread position: | 1-419 |
| Cow position: | chr4:33495999-33495563 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 283 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 120, 172 |
| Conread position: | 1-419 |
| Cow position: | chr4:36898815-36898386 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 278 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 130, 361 |
| Conread position: | 1-420 |
| Cow position: | chr4:67649616-67650065 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 15 |
| Conread position: | 1-423 |
| Cow position: | chr4:3355522-3355962 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 290 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 110, 106 |
| Conread position: | 1-425 |
| Cow position: | chr4:25597048-25597485 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 285 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 123, 286 |
| Conread position: | 1-429 |
| Cow position: | chr4:6613713-6614149 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 301 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 114, 16 |
| Conread position: | 1-429 |
| Cow position: | chr4:43317211-43317655 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 295 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 123, 67 |
| Conread position: | 2-419 |
| Cow position: | chr4:4418487-4418055 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 285 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 111, 207 |
| Conread position: | 3-311 |
| Cow position: | chr4:13464249-13463925 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 40, 29 |
| Conread position: | 3-391 |
| Cow position: | chr4:1928186-1928587 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 273 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 110, 343 |
| Conread position: | 3-391 |
| Cow position: | chr4:6863795-6864196 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 266 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 15, 22 |
| Conread position: | 3-419 |
| Cow position: | chr4:161599-161176 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 287 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 110, 28 |
| Conread position: | 3-419 |
| Cow position: | chr4:606047-605627 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 37, 29 |
| Conread position: | 3-419 |
| Cow position: | chr4:6266777-6267209 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 288 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 110, 93 |
| Conread position: | 3-419 |
| Cow position: | chr4:16061717-16061285 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 286 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 3-419 |
| Cow position: | chr4:33021196-33021623 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 5-401 |
| Cow position: | chr4:57986454-57986041 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 273 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 119, 283 |
| Conread position: | 5-419 |
| Cow position: | chr4:41957197-41956770 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 5-419 |
| Cow position: | chr4:41961332-41960906 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 276 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 17-401 |
| Cow position: | chr4:23304915-23305306 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 271 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 13, 156 |
| Conread position: | 17-423 |
| Cow position: | chr4:18474470-18474861 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 261 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 193, 12 |
| Conread position: | 18-365 |
| Cow position: | chr4:63426652-63427013 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 17, 222 |
| Conread position: | 18-401 |
| Cow position: | chr4:46712173-46712570 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 12, 133 |
| Conread position: | 18-412 |
| Cow position: | chr4:44728006-44727602 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 261 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 12, 77 |
| Conread position: | 18-419 |
| Cow position: | chr4:6487946-6488360 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 274 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 11, 173 |
| Conread position: | 18-429 |
| Cow position: | chr4:16362628-16362202 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 278 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 8, 133 |
| Conread position: | 18-429 |
| Cow position: | chr4:16641035-16640608 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 280 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 12, 331 |
| Conread position: | 20-419 |
| Cow position: | chr4:3128241-3127825 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 276 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 20-419 |
| Cow position: | chr4:12606461-12606872 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 7, 18 |
| Conread position: | 20-419 |
| Cow position: | chr4:21574181-21573773 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 273 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 109, 322 |
| Conread position: | 20-419 |
| Cow position: | chr4:40217261-40216846 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 274 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 21-375 |
| Cow position: | chr4:50807877-50807508 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 253 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 94, 304 |
| Conread position: | 23-391 |
| Cow position: | chr4:15815078-15815465 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 252 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 101, 148 |
| Conread position: | 34-419 |
| Cow position: | chr4:32214582-32214183 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 268 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 6, 288 |
| Conread position: | 39-419 |
| Cow position: | chr4:35306413-35306800 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 74, 110 |
| Conread position: | 42-391 |
| Cow position: | chr4:17923558-17923924 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 241 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 69, 65 |
| Conread position: | 43-407 |
| Cow position: | chr4:66635897-66636270 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 12, 210 |
| Conread position: | 45-429 |
| Cow position: | chr4:15653669-15654083 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 277 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 68, 206 |
Show alignments to all cow chromosomes.