Cow genome map
| Conread name: | rlin28_k10.y1 |
| Conread position: | 1-229 |
| Cow position: | chr5:67621764-67621531 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 114, 206 |
| Conread position: | 1-338 |
| Cow position: | chr5:7058542-7058213 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 252, 16 |
| Conread position: | 1-391 |
| Cow position: | chr5:7276372-7275965 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 264 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 123, 148 |
| Conread position: | 1-399 |
| Cow position: | chr5:18249597-18249184 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 272 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 123, 76 |
| Conread position: | 1-401 |
| Cow position: | chr5:44709841-44710258 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 278 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 1-401 |
| Cow position: | chr5:64779465-64779882 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 1-414 |
| Cow position: | chr5:3788766-3788336 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 1-418 |
| Cow position: | chr5:54822594-54823010 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 284 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 130, 37 |
| Conread position: | 1-419 |
| Cow position: | chr5:24101189-24100755 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 282 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 123, 250 |
| Conread position: | 1-425 |
| Cow position: | chr5:3501589-3502023 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 288 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 126, 148 |
| Conread position: | 1-429 |
| Cow position: | chr5:18558864-18559303 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 293 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 31, 42 |
| Conread position: | 3-338 |
| Cow position: | chr5:12232701-12232360 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 234 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 124, 16 |
| Conread position: | 3-376 |
| Cow position: | chr5:46792388-46791999 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 260 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 3-391 |
| Cow position: | chr5:31120670-31121067 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 46, 186 |
| Conread position: | 3-392 |
| Cow position: | chr5:4083114-4083506 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 265 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 13, 41 |
| Conread position: | 3-418 |
| Cow position: | chr5:10513737-10514169 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 280 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 37, 29 |
| Conread position: | 3-419 |
| Cow position: | chr5:5105761-5105332 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 289 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 115, 168 |
| Conread position: | 3-419 |
| Cow position: | chr5:5925424-5925857 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 3-419 |
| Cow position: | chr5:6585924-6586354 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 289 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 110, 288 |
| Conread position: | 3-419 |
| Cow position: | chr5:18119942-18120369 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 287 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 110, 74 |
| Conread position: | 3-419 |
| Cow position: | chr5:45180556-45180986 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 282 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 110, 342 |
| Conread position: | 3-419 |
| Cow position: | chr5:49221956-49222392 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 291 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 100, 171 |
| Conread position: | 3-419 |
| Cow position: | chr5:51166770-51167194 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 286 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 110, 287 |
| Conread position: | 3-419 |
| Cow position: | chr5:51745759-51745337 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 285 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 110, 318 |
| Conread position: | 3-422 |
| Cow position: | chr5:27196543-27196979 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 288 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 3-423 |
| Cow position: | chr5:58198547-58198127 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 272 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 142, 170 |
| Conread position: | 5-375 |
| Cow position: | chr5:63092062-63091681 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 113, 81 |
| Conread position: | 18-391 |
| Cow position: | chr5:47342238-47341856 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 258 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 12, 91 |
| Conread position: | 18-392 |
| Cow position: | chr5:46735756-46736146 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 12, 275 |
| Conread position: | 18-401 |
| Cow position: | chr5:10854292-10854692 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 263 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 12, 319 |
| Conread position: | 20-419 |
| Cow position: | chr5:54928393-54928807 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 277 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 93, 219 |
| Conread position: | 23-419 |
| Cow position: | chr5:10921358-10920951 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 103, 45 |
| Conread position: | 25-303 |
| Cow position: | chr5:49816054-49815756 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 33-360 |
| Cow position: | chr5:26984223-26983909 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 304, 84 |
| Conread position: | 33-422 |
| Cow position: | chr5:53944338-53943937 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 235 |
| Conread position: | 39-419 |
| Cow position: | chr5:48226073-48226466 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 41-429 |
| Cow position: | chr5:58190256-58190661 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 274 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 95, 249 |
| Conread position: | 42-421 |
| Cow position: | chr5:51946682-51946281 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 152 |
| Conread position: | 49-382 |
| Cow position: | chr5:57949320-57948972 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 239 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 53-419 |
| Cow position: | chr5:3966923-3966542 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 254 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 60, 156 |
Show alignments to all cow chromosomes.