Cow genome map
| Conread name: | rlin28_k10.y1 |
| Conread position: | 1-150 |
| Cow position: | chr6:7057699-7057846 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 1-353 |
| Cow position: | chr6:55901923-55901559 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 231 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 123, 281 |
| Conread position: | 1-389 |
| Cow position: | chr6:3886829-3887234 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 270 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 1-391 |
| Cow position: | chr6:11722518-11722924 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 266 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 123, 20 |
| Conread position: | 1-391 |
| Cow position: | chr6:51732759-51732355 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 272 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 123, 339 |
| Conread position: | 1-392 |
| Cow position: | chr6:24241968-24241560 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 275 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 123, 290 |
| Conread position: | 1-392 |
| Cow position: | chr6:27475091-27474691 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 123, 342 |
| Conread position: | 1-392 |
| Cow position: | chr6:39331853-39332256 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 261 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 123, 170 |
| Conread position: | 1-401 |
| Cow position: | chr6:48895-49310 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 123, 365 |
| Conread position: | 1-401 |
| Cow position: | chr6:3485721-3486134 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 273 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 1-401 |
| Cow position: | chr6:5947098-5947519 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 271 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 1-401 |
| Cow position: | chr6:8204857-8204442 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 276 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 120, 291 |
| Conread position: | 1-401 |
| Cow position: | chr6:20557274-20557682 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 272 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 123, 67 |
| Conread position: | 1-401 |
| Cow position: | chr6:50486117-50486534 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 280 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 97, 170 |
| Conread position: | 1-402 |
| Cow position: | chr6:43620408-43619991 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 170 |
| Conread position: | 1-406 |
| Cow position: | chr6:25216976-25216560 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 274 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 120, 342 |
| Conread position: | 1-419 |
| Cow position: | chr6:13308708-13309139 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 283 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 1-420 |
| Cow position: | chr6:25791018-25791453 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 292 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 31, 349 |
| Conread position: | 1-421 |
| Cow position: | chr6:18751509-18751942 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 36 |
| Conread position: | 1-423 |
| Cow position: | chr6:8536616-8537062 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 295 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 1-423 |
| Cow position: | chr6:51717223-51716784 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 289 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 1-427 |
| Cow position: | chr6:44018151-44018591 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 286 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 77, 187 |
| Conread position: | 1-429 |
| Cow position: | chr6:16592646-16592208 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 342 |
| Conread position: | 3-330 |
| Cow position: | chr6:28001705-28002050 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 115, 289 |
| Conread position: | 3-376 |
| Cow position: | chr6:28702034-28702419 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 258 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 121, 257 |
| Conread position: | 3-382 |
| Cow position: | chr6:50720773-50720395 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 245 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 88, 101 |
| Conread position: | 3-391 |
| Cow position: | chr6:28064665-28064268 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 266 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 110, 93 |
| Conread position: | 3-401 |
| Cow position: | chr6:1536385-1535963 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 273 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 3-417 |
| Cow position: | chr6:28135609-28135182 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 110, 93 |
| Conread position: | 3-418 |
| Cow position: | chr6:328684-329112 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 318 |
| Conread position: | 3-419 |
| Cow position: | chr6:11870256-11870685 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 162 |
| Conread position: | 3-419 |
| Cow position: | chr6:13849748-13849320 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 287 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 106, 14 |
| Conread position: | 3-419 |
| Cow position: | chr6:16050615-16051046 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 206 |
| Conread position: | 3-419 |
| Cow position: | chr6:17595610-17596043 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 285 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 110, 288 |
| Conread position: | 3-419 |
| Cow position: | chr6:18912799-18913232 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 3-419 |
| Cow position: | chr6:27151765-27152198 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 286 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 37, 29 |
| Conread position: | 3-419 |
| Cow position: | chr6:34129132-34128705 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 288 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 37, 29 |
| Conread position: | 3-419 |
| Cow position: | chr6:37387255-37386827 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 283 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 110, 43 |
| Conread position: | 3-419 |
| Cow position: | chr6:39912001-39911570 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 284 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 128, 110 |
| Conread position: | 3-419 |
| Cow position: | chr6:55238370-55237937 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 167 |
| Conread position: | 3-419 |
| Cow position: | chr6:68029852-68029422 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 286 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 110, 344 |
| Conread position: | 3-421 |
| Cow position: | chr6:3151894-3151474 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 279 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 110, 64 |
| Conread position: | 17-398 |
| Cow position: | chr6:40974849-40974451 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 13, 223 |
| Conread position: | 18-401 |
| Cow position: | chr6:38873996-38874395 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 12, 331 |
| Conread position: | 18-401 |
| Cow position: | chr6:39435259-39435659 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 275 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 12, 224 |
| Conread position: | 18-401 |
| Cow position: | chr6:47040536-47040925 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 269 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 7, 93 |
| Conread position: | 18-401 |
| Cow position: | chr6:55539607-55540009 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 20-376 |
| Cow position: | chr6:40277725-40277361 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 240 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 93, 12 |
| Conread position: | 20-419 |
| Cow position: | chr6:51149600-51149184 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 277 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 93, 342 |
| Conread position: | 21-419 |
| Cow position: | chr6:14928120-14927706 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 284 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 57, 152 |
| Conread position: | 22-391 |
| Cow position: | chr6:28171563-28171180 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 102, 325 |
| Conread position: | 23-348 |
| Cow position: | chr6:14502485-14502142 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 230 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 25-429 |
| Cow position: | chr6:6439461-6439045 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 45 |
| Conread position: | 46-419 |
| Cow position: | chr6:53544732-53544343 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 49-424 |
| Cow position: | chr6:5112439-5112832 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 8 |
Show alignments to all cow chromosomes.